Information for 8-CCGGCATTCACTA (Motif 11)

A G T C A G T C C T A G A C T G A G T C C G T A A C G T C G A T A T G C C G T A G T A C C G A T G T C A
Reverse Opposite:
A C G T C G T A A C T G A C G T A T C G C G T A C G T A C G A T A C T G A G T C G A T C A C T G A C T G
p-value:1e-13
log p-value:-3.176e+01
Information Content per bp:1.860
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.7 +/- 29.8bp
Average Position of motif in Background41.3 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GCM2/MA0767.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCATTCACTA
TACCCGCATN-----
 A C G T A C G T A G T C A G T C C T A G A C T G A G T C C G T A A C G T C G A T A T G C C G T A G T A C C G A T G T C A
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T A C G T A C G T A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCGGCATTCACTA
TCGTACCCGCATCATT--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C T A G A C T G A G T C C G T A A C G T C G A T A T G C C G T A G T A C C G A T G T C A
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T A C G T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCGGCATTCACTA
GTACCCGCATN-----
 A C G T A C G T A C G T A G T C A G T C C T A G A C T G A G T C C G T A A C G T C G A T A T G C C G T A G T A C C G A T G T C A
T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCGGCATTCACTA--
AGCGGCACACACGCAA
 A C G T A G T C A G T C C T A G A C T G A G T C C G T A A C G T C G A T A T G C C G T A G T A C C G A T G T C A A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

YY2/MA0748.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCGGCATTCACTA
GTCCGCCATTA----
 A C G T A C G T A G T C A G T C C T A G A C T G A G T C C G T A A C G T C G A T A T G C C G T A G T A C C G A T G T C A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCGGCATTCACTA----
---ACATTCATGACACG
 A G T C A G T C C T A G A C T G A G T C C G T A A C G T C G A T A T G C C G T A G T A C C G A T G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CCGGCATTCACTA---
GACCACATTCATACAAT
 A C G T A G T C A G T C C T A G A C T G A G T C C G T A A C G T C G A T A T G C C G T A G T A C C G A T G T C A A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

FOXH1/MA0479.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CCGGCATTCACTA
-TCCAATCCACA-
 A G T C A G T C C T A G A C T G A G T C C G T A A C G T C G A T A T G C C G T A G T A C C G A T G T C A
A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCATTCACTA-
NNNNTGAATTCANNNC
 A C G T A C G T A G T C A G T C C T A G A C T G A G T C C G T A A C G T C G A T A T G C C G T A G T A C C G A T G T C A A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CCGGCATTCACTA
SCTGTCAVTCAV--
 A C G T A G T C A G T C C T A G A C T G A G T C C G T A A C G T C G A T A T G C C G T A G T A C C G A T G T C A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T