Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-199 | -4.595e+02 | 0.0000 | 415.0 | 52.47% | 4634.8 | 9.79% | motif file (matrix) |
svg |
2 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-169 | -3.899e+02 | 0.0000 | 287.0 | 36.28% | 2202.7 | 4.65% | motif file (matrix) |
svg |
3 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-163 | -3.771e+02 | 0.0000 | 365.0 | 46.14% | 4256.4 | 8.99% | motif file (matrix) |
svg |
4 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-154 | -3.555e+02 | 0.0000 | 361.0 | 45.64% | 4434.2 | 9.36% | motif file (matrix) |
svg |
5 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-130 | -3.001e+02 | 0.0000 | 231.0 | 29.20% | 1823.3 | 3.85% | motif file (matrix) |
svg |
6 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-122 | -2.810e+02 | 0.0000 | 260.0 | 32.87% | 2670.3 | 5.64% | motif file (matrix) |
svg |
7 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-102 | -2.362e+02 | 0.0000 | 214.0 | 27.05% | 2081.9 | 4.40% | motif file (matrix) |
svg |
8 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-85 | -1.964e+02 | 0.0000 | 104.0 | 13.15% | 405.8 | 0.86% | motif file (matrix) |
svg |
9 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-59 | -1.376e+02 | 0.0000 | 160.0 | 20.23% | 2012.6 | 4.25% | motif file (matrix) |
svg |
10 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-25 | -5.823e+01 | 0.0000 | 76.0 | 9.61% | 1047.1 | 2.21% | motif file (matrix) |
svg |
11 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-22 | -5.091e+01 | 0.0000 | 76.0 | 9.61% | 1185.1 | 2.50% | motif file (matrix) |
svg |
12 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-20 | -4.730e+01 | 0.0000 | 29.0 | 3.67% | 151.9 | 0.32% | motif file (matrix) |
svg |
13 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-19 | -4.532e+01 | 0.0000 | 55.0 | 6.95% | 707.8 | 1.49% | motif file (matrix) |
svg |
14 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-13 | -3.089e+01 | 0.0000 | 56.0 | 7.08% | 1029.2 | 2.17% | motif file (matrix) |
svg |
15 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-12 | -2.941e+01 | 0.0000 | 60.0 | 7.59% | 1201.4 | 2.54% | motif file (matrix) |
svg |
16 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-10 | -2.524e+01 | 0.0000 | 74.0 | 9.36% | 1853.1 | 3.91% | motif file (matrix) |
svg |
17 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-10 | -2.506e+01 | 0.0000 | 71.0 | 8.98% | 1745.7 | 3.69% | motif file (matrix) |
svg |
18 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-10 | -2.472e+01 | 0.0000 | 24.0 | 3.03% | 250.5 | 0.53% | motif file (matrix) |
svg |
19 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-8 | -1.880e+01 | 0.0000 | 53.0 | 6.70% | 1310.9 | 2.77% | motif file (matrix) |
svg |
20 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-7 | -1.763e+01 | 0.0000 | 73.0 | 9.23% | 2172.9 | 4.59% | motif file (matrix) |
svg |
21 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-6 | -1.459e+01 | 0.0000 | 33.0 | 4.17% | 730.0 | 1.54% | motif file (matrix) |
svg |
22 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-5 | -1.346e+01 | 0.0000 | 117.0 | 14.79% | 4505.9 | 9.51% | motif file (matrix) |
svg |
23 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-5 | -1.199e+01 | 0.0001 | 256.0 | 32.36% | 12015.8 | 25.37% | motif file (matrix) |
svg |
24 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-5 | -1.156e+01 | 0.0001 | 53.0 | 6.70% | 1669.0 | 3.52% | motif file (matrix) |
svg |
25 |
| Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-4 | -1.146e+01 | 0.0002 | 64.0 | 8.09% | 2163.2 | 4.57% | motif file (matrix) |
svg |
26 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-4 | -1.068e+01 | 0.0003 | 36.0 | 4.55% | 1002.5 | 2.12% | motif file (matrix) |
svg |
27 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-4 | -1.014e+01 | 0.0005 | 75.0 | 9.48% | 2779.0 | 5.87% | motif file (matrix) |
svg |
28 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-4 | -9.468e+00 | 0.0010 | 163.0 | 20.61% | 7338.7 | 15.49% | motif file (matrix) |
svg |
29 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-3 | -9.045e+00 | 0.0015 | 84.0 | 10.62% | 3319.0 | 7.01% | motif file (matrix) |
svg |
30 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-3 | -8.668e+00 | 0.0021 | 9.0 | 1.14% | 115.3 | 0.24% | motif file (matrix) |
svg |
31 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-3 | -8.363e+00 | 0.0027 | 15.0 | 1.90% | 302.5 | 0.64% | motif file (matrix) |
svg |
32 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-3 | -7.824e+00 | 0.0046 | 17.0 | 2.15% | 389.7 | 0.82% | motif file (matrix) |
svg |
33 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-3 | -7.749e+00 | 0.0048 | 48.0 | 6.07% | 1710.2 | 3.61% | motif file (matrix) |
svg |
34 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-3 | -7.638e+00 | 0.0052 | 20.0 | 2.53% | 508.1 | 1.07% | motif file (matrix) |
svg |
35 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-3 | -7.515e+00 | 0.0057 | 46.0 | 5.82% | 1636.9 | 3.46% | motif file (matrix) |
svg |
36 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-3 | -7.457e+00 | 0.0058 | 7.0 | 0.88% | 83.1 | 0.18% | motif file (matrix) |
svg |
37 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-3 | -7.419e+00 | 0.0059 | 16.0 | 2.02% | 367.2 | 0.78% | motif file (matrix) |
svg |
38 |
| Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer | 1e-3 | -7.416e+00 | 0.0059 | 11.0 | 1.39% | 197.4 | 0.42% | motif file (matrix) |
svg |
39 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.245e+00 | 0.0067 | 15.0 | 1.90% | 337.1 | 0.71% | motif file (matrix) |
svg |
40 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-3 | -7.104e+00 | 0.0075 | 30.0 | 3.79% | 946.5 | 2.00% | motif file (matrix) |
svg |
41 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-3 | -7.103e+00 | 0.0075 | 250.0 | 31.61% | 12561.0 | 26.52% | motif file (matrix) |
svg |
42 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-3 | -7.086e+00 | 0.0075 | 46.0 | 5.82% | 1671.8 | 3.53% | motif file (matrix) |
svg |
43 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-3 | -6.971e+00 | 0.0079 | 9.0 | 1.14% | 146.4 | 0.31% | motif file (matrix) |
svg |
44 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-3 | -6.920e+00 | 0.0082 | 71.0 | 8.98% | 2901.9 | 6.13% | motif file (matrix) |
svg |
45 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -6.832e+00 | 0.0087 | 34.0 | 4.30% | 1140.3 | 2.41% | motif file (matrix) |
svg |
46 |
| NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -6.832e+00 | 0.0087 | 9.0 | 1.14% | 149.5 | 0.32% | motif file (matrix) |
svg |
47 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -6.812e+00 | 0.0087 | 115.0 | 14.54% | 5184.9 | 10.95% | motif file (matrix) |
svg |
48 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-2 | -6.680e+00 | 0.0095 | 98.0 | 12.39% | 4311.9 | 9.10% | motif file (matrix) |
svg |
49 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-2 | -6.657e+00 | 0.0095 | 138.0 | 17.45% | 6437.7 | 13.59% | motif file (matrix) |
svg |
50 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -6.553e+00 | 0.0104 | 29.0 | 3.67% | 937.8 | 1.98% | motif file (matrix) |
svg |
51 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.394e+00 | 0.0119 | 56.0 | 7.08% | 2215.4 | 4.68% | motif file (matrix) |
svg |
52 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-2 | -6.123e+00 | 0.0153 | 33.0 | 4.17% | 1146.3 | 2.42% | motif file (matrix) |
svg |
53 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-2 | -5.806e+00 | 0.0207 | 53.0 | 6.70% | 2129.3 | 4.50% | motif file (matrix) |
svg |
54 |
| EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-2 | -5.790e+00 | 0.0207 | 46.0 | 5.82% | 1788.5 | 3.78% | motif file (matrix) |
svg |
55 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-2 | -5.685e+00 | 0.0225 | 167.0 | 21.11% | 8205.1 | 17.32% | motif file (matrix) |
svg |
56 |
| Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer | 1e-2 | -5.683e+00 | 0.0225 | 13.0 | 1.64% | 320.9 | 0.68% | motif file (matrix) |
svg |
57 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -5.614e+00 | 0.0233 | 179.0 | 22.63% | 8887.7 | 18.77% | motif file (matrix) |
svg |
58 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.500e+00 | 0.0257 | 37.0 | 4.68% | 1383.5 | 2.92% | motif file (matrix) |
svg |
59 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-2 | -5.362e+00 | 0.0289 | 2.0 | 0.25% | 6.0 | 0.01% | motif file (matrix) |
svg |
60 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.343e+00 | 0.0290 | 59.0 | 7.46% | 2482.3 | 5.24% | motif file (matrix) |
svg |
61 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-2 | -5.178e+00 | 0.0336 | 51.0 | 6.45% | 2099.3 | 4.43% | motif file (matrix) |
svg |
62 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.158e+00 | 0.0338 | 10.0 | 1.26% | 228.8 | 0.48% | motif file (matrix) |
svg |
63 |
| Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer | 1e-2 | -4.990e+00 | 0.0393 | 69.0 | 8.72% | 3041.6 | 6.42% | motif file (matrix) |
svg |
64 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-2 | -4.807e+00 | 0.0465 | 25.0 | 3.16% | 879.8 | 1.86% | motif file (matrix) |
svg |
65 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -4.684e+00 | 0.0518 | 154.0 | 19.47% | 7698.0 | 16.25% | motif file (matrix) |
svg |
66 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -4.642e+00 | 0.0532 | 31.0 | 3.92% | 1174.1 | 2.48% | motif file (matrix) |
svg |