Information for 4-CCATTCAAAG (Motif 4)

G T A C G A T C G C T A A G C T A C G T A T G C C G T A C T G A C T G A A C T G
Reverse Opposite:
T G A C G A C T G A C T A C G T T A C G C G T A C T G A C G A T C T A G C A T G
p-value:1e-20
log p-value:-4.765e+01
Information Content per bp:1.681
Number of Target Sequences with motif105.0
Percentage of Target Sequences with motif13.27%
Number of Background Sequences with motif2210.7
Percentage of Background Sequences with motif4.67%
Average Position of motif in Targets44.4 +/- 25.8bp
Average Position of motif in Background49.7 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CCATTCAAAG---
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T G T A C G A T C G C T A A G C T A C G T A T G C C G T A C T G A C T G A A C T G A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CCATTCAAAG
-NATTCAAAT
 G T A C G A T C G C T A A G C T A C G T A T G C C G T A C T G A C T G A A C T G
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CCATTCAAAG----
ACATTCATGACACG
 G T A C G A T C G C T A A G C T A C G T A T G C C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----CCATTCAAAG-
NNCATTCATTCATNNN
 A C G T A C G T A C G T A C G T A C G T G T A C G A T C G C T A A G C T A C G T A T G C C G T A C T G A C T G A A C T G A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCATTCAAAG--
CCTTTTATAGNC
 G T A C G A T C G C T A A G C T A C G T A T G C C G T A C T G A C T G A A C T G A C G T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCATTCAAAG
CGGTTTCAAA-
 A C G T G T A C G A T C G C T A A G C T A C G T A T G C C G T A C T G A C T G A A C T G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCATTCAAAG
AGCCACTCAAG-
 A C G T A C G T G T A C G A T C G C T A A G C T A C G T A T G C C G T A C T G A C T G A A C T G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCATTCAAAG---
AATCAATTCAATAATT
 A C G T A C G T A C G T G T A C G A T C G C T A A G C T A C G T A T G C C G T A C T G A C T G A A C T G A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCATTCAAAG
CCAATCAA--
 G T A C G A T C G C T A A G C T A C G T A T G C C G T A C T G A C T G A A C T G
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCATTCAAAG
ACTAGCCAATCA---
 A C G T A C G T A C G T A C G T A C G T G T A C G A T C G C T A A G C T A C G T A T G C C G T A C T G A C T G A A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T