Information for 3-CGCCCYCTAGTGG (Motif 3)

A G T C C A T G T A G C A T G C G A T C A G C T A T G C A C G T C G T A T C A G C G A T A C T G A C T G
Reverse Opposite:
T G A C A G T C C G T A A G T C G C A T C G T A A T C G C T G A C T A G A T C G A C T G G T A C C T A G
p-value:1e-24
log p-value:-5.626e+01
Information Content per bp:1.734
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.16%
Number of Background Sequences with motif68.6
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets59.4 +/- 25.6bp
Average Position of motif in Background47.5 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CGCCCYCTAGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C C A T G T A G C A T G C G A T C A G C T A T G C A C G T C G T A T C A G C G A T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----CGCCCYCTAGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C C A T G T A G C A T G C G A T C A G C T A T G C A C G T C G T A T C A G C G A T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.88
Offset:-6
Orientation:forward strand
Alignment:------CGCCCYCTAGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C A T G T A G C A T G C G A T C A G C T A T G C A C G T C G T A T C A G C G A T A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CGCCCYCTAGTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T A G T C C A T G T A G C A T G C G A T C A G C T A T G C A C G T C G T A T C A G C G A T A C T G A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:5
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:CGCCCYCTAGTGG--
---------GTGGAT
 A G T C C A T G T A G C A T G C G A T C A G C T A T G C A C G T C G T A T C A G C G A T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

Znf423/MA0116.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CGCCCYCTAGTGG---
-GGCACCCAGGGGTGC
 A G T C C A T G T A G C A T G C G A T C A G C T A T G C A C G T C G T A T C A G C G A T A C T G A C T G A C G T A C G T A C G T
A C G T T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CGCCCYCTAGTGG-
----NTCAAGTGGN
 A G T C C A T G T A G C A T G C G A T C A G C T A T G C A C G T C G T A T C A G C G A T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGCCCYCTAGTGG
GCCGCCATCTTG---
 A C G T A C G T A G T C C A T G T A G C A T G C G A T C A G C T A T G C A C G T C G T A T C A G C G A T A C T G A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T

KLF13/MA0657.1/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CGCCCYCTAGTGG
ATGCCACGCCCCTTTTTG-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C A T G T A G C A T G C G A T C A G C T A T G C A C G T C G T A T C A G C G A T A C T G A C T G
C T G A C A G T C T A G G T A C G T A C C T G A A T G C C T A G A G T C G T A C G A T C G T A C A G C T G A C T C A G T C A G T C A G T C A T G A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CGCCCYCTAGTGG--
NTCNTCCCCTATNNGNN
 A C G T A C G T A G T C C A T G T A G C A T G C G A T C A G C T A T G C A C G T C G T A T C A G C G A T A C T G A C T G A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A