Information for 2-ATTSTHATGC (Motif 2)

C G T A C G A T A C G T T A C G C G A T G C A T G C T A A C G T A C T G G A T C
Reverse Opposite:
C T A G G T A C G T C A C G A T C G T A C G T A A T G C C G T A C G T A G C A T
p-value:1e-59
log p-value:-1.381e+02
Information Content per bp:1.713
Number of Target Sequences with motif114.0
Percentage of Target Sequences with motif14.41%
Number of Background Sequences with motif933.4
Percentage of Background Sequences with motif1.97%
Average Position of motif in Targets52.0 +/- 22.6bp
Average Position of motif in Background49.7 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-ATTSTHATGC----
CTTTGTTATGCAAAT
 A C G T C G T A C G A T A C G T T A C G C G A T G C A T G C T A A C G T A C T G G A T C A C G T A C G T A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-ATTSTHATGC----
CATTGTTATGCAAAT
 A C G T C G T A C G A T A C G T T A C G C G A T G C A T G C T A A C G T A C T G G A T C A C G T A C G T A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ATTSTHATGC--
NANTATTATAATTNNN
 A C G T A C G T A C G T A C G T C G T A C G A T A C G T T A C G C G A T G C A T G C T A A C G T A C T G G A T C A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

PB0064.1_Sox14_1/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----ATTSTHATGC--
NNTAATTATAATTNNN
 A C G T A C G T A C G T A C G T C G T A C G A T A C G T T A C G C G A T G C A T G C T A A C G T A C T G G A T C A C G T A C G T
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

PB0069.1_Sox21_1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----ATTSTHATGC--
NNTAATTATAATNANN
 A C G T A C G T A C G T A C G T C G T A C G A T A C G T T A C G C G A T G C A T G C T A A C G T A C T G G A T C A C G T A C G T
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

PB0174.1_Sox30_2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ATTSTHATGC--
TAAGATTATAATACGG
 A C G T A C G T A C G T A C G T C G T A C G A T A C G T T A C G C G A T G C A T G C T A A C G T A C T G G A T C A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATTSTHATGC
ATTGTT----
 C G T A C G A T A C G T T A C G C G A T G C A T G C T A A C G T A C T G G A T C
G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATTSTHATGC-
AAAATTGTTATGAA
 A C G T A C G T A C G T C G T A C G A T A C G T T A C G C G A T G C A T G C T A A C G T A C T G G A T C A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ATTSTHATGC--
NCNTTTGTTATTTNN
 A C G T A C G T A C G T C G T A C G A T A C G T T A C G C G A T G C A T G C T A A C G T A C T G G A T C A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PB0169.1_Sox15_2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATTSTHATGC--
TTGAATGAAATTCGA
 A C G T A C G T A C G T C G T A C G A T A C G T T A C G C G A T G C A T G C T A A C G T A C T G G A T C A C G T A C G T
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A