Information for 12-GAATCGGCGA (Motif 16)

A T C G G T C A C G T A C G A T T G A C A C T G A C T G A T G C C T A G C T G A
Reverse Opposite:
G A C T G A T C A T C G T A G C A G T C A C T G C G T A A C G T A C G T T A G C
p-value:1e-3
log p-value:-8.358e+00
Information Content per bp:1.712
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif120.3
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets53.5 +/- 31.4bp
Average Position of motif in Background47.8 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAATCGGCGA
GTTAATGGCC--
 A C G T A C G T A T C G G T C A C G T A C G A T T G A C A C T G A C T G A T G C C T A G C T G A
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAATCGGCGA
CTAATCGNT--
 A C G T A T C G G T C A C G T A C G A T T G A C A C T G A C T G A T G C C T A G C T G A
G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAATCGGCGA
NTAATTGG---
 A C G T A T C G G T C A C G T A C G A T T G A C A C T G A C T G A T G C C T A G C T G A
A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAATCGGCGA
CCGATTGGCT-
 A C G T A T C G G T C A C G T A C G A T T G A C A C T G A C T G A T G C C T A G C T G A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAATCGGCGA
NTAATTGN---
 A C G T A T C G G T C A C G T A C G A T T G A C A C T G A C T G A T G C C T A G C T G A
A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAATCGGCGA
---TTGGCA-
 A T C G G T C A C G T A C G A T T G A C A C T G A C T G A T G C C T A G C T G A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAATCGGCGA-
--NTTGGCANN
 A T C G G T C A C G T A C G A T T G A C A C T G A C T G A T G C C T A G C T G A A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PB0128.1_Gcm1_2/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GAATCGGCGA----
TGCGCATAGGGGAGGAG
 A C G T A C G T A C G T A T C G G T C A C G T A C G A T T G A C A C T G A C T G A T G C C T A G C T G A A C G T A C G T A C G T A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAATCGGCGA-
-NNTTGGCANN
 A T C G G T C A C G T A C G A T T G A C A C T G A C T G A T G C C T A G C T G A A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GAATCGGCGA-
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T C A C G T A C G A T T G A C A C T G A C T G A T G C C T A G C T G A A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A