Information for 1-CCWTTGTTYB (Motif 1)

A G T C G A T C G C T A A C G T A C G T A T C G C G A T A G C T G A C T A G C T
Reverse Opposite:
T C G A C T G A T C G A C G T A T A G C C G T A G T C A C G A T C T A G T C A G
p-value:1e-203
log p-value:-4.693e+02
Information Content per bp:1.659
Number of Target Sequences with motif414.0
Percentage of Target Sequences with motif52.34%
Number of Background Sequences with motif4486.3
Percentage of Background Sequences with motif9.47%
Average Position of motif in Targets54.0 +/- 22.1bp
Average Position of motif in Background51.4 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:1
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-CCWTTGTTYB
NCCATTGTTY-
 A C G T A G T C G A T C G C T A A C G T A C G T A T C G C G A T A G C T G A C T A G C T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:CCWTTGTTYB
CCWTTGTYYB
 A G T C G A T C G C T A A C G T A C G T A T C G C G A T A G C T G A C T A G C T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.98
Offset:0
Orientation:forward strand
Alignment:CCWTTGTTYB
CCATTGTTTT
 A G T C G A T C G C T A A C G T A C G T A T C G C G A T A G C T G A C T A G C T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.97
Offset:0
Orientation:forward strand
Alignment:CCWTTGTTYB
CCWTTGTY--
 A G T C G A T C G C T A A C G T A C G T A T C G C G A T A G C T G A C T A G C T
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.97
Offset:0
Orientation:forward strand
Alignment:CCWTTGTTYB
CCATTGTTYB
 A G T C G A T C G C T A A C G T A C G T A T C G C G A T A G C T G A C T A G C T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.97
Offset:0
Orientation:forward strand
Alignment:CCWTTGTTYB
CCATTGTTNY
 A G T C G A T C G C T A A C G T A C G T A T C G C G A T A G C T G A C T A G C T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-CCWTTGTTYB
NCCATTGTTC-
 A C G T A G T C G A T C G C T A A C G T A C G T A T C G C G A T A G C T G A C T A G C T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.95
Offset:0
Orientation:forward strand
Alignment:CCWTTGTTYB
CCTTTGTT--
 A G T C G A T C G C T A A C G T A C G T A T C G C G A T A G C T G A C T A G C T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CCWTTGTTYB
CCTTTGTTTT
 A G T C G A T C G C T A A C G T A C G T A T C G C G A T A G C T G A C T A G C T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.93
Offset:-4
Orientation:reverse strand
Alignment:----CCWTTGTTYB---
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A G T C G A T C G C T A A C G T A C G T A T C G C G A T A G C T G A C T A G C T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T