Information for 13-GCGCAGCCAT (Motif 20)

A C T G A T G C A T C G A G T C C T G A A C T G G T A C G T A C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C T G A G T C A G C T A C T G T A G C T A C G G T A C
p-value:1e-8
log p-value:-1.900e+01
Information Content per bp:1.830
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif79.4
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets44.4 +/- 27.8bp
Average Position of motif in Background51.8 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)2.7
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GCGCAGCCAT----
--GCNGCCATCTTG
 A C T G A T G C A T C G A G T C C T G A A C T G G T A C G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GCGCAGCCAT----
--GCCGCCATCTTG
 A C T G A T G C A T C G A G T C C T G A A C T G G T A C G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCGCAGCCAT--
-GTCCGCCATTA
 A C T G A T G C A T C G A G T C C T G A A C T G G T A C G T A C C G T A A C G T A C G T A C G T
A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GCGCAGCCAT----
----GGCCATTAAC
 A C T G A T G C A T C G A G T C C T G A A C T G G T A C G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCGCAGCCAT
--BCAGACWA
 A C T G A T G C A T C G A G T C C T G A A C T G G T A C G T A C C G T A A C G T
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCGCAGCCAT
TGCCCAGNHW-
 A C G T A C T G A T G C A T C G A G T C C T G A A C T G G T A C G T A C C G T A A C G T
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCGCAGCCAT
-CACAGN---
 A C T G A T G C A T C G A G T C C T G A A C T G G T A C G T A C C G T A A C G T
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCGCAGCCAT
---CAGCC--
 A C T G A T G C A T C G A G T C C T G A A C T G G T A C G T A C C G T A A C G T
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCGCAGCCAT-------
--SCAGYCADGCATGAC
 A C T G A T G C A T C G A G T C C T G A A C T G G T A C G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCGCAGCCAT--
ATGCCCGGGCATGT
 A C G T A C G T A C T G A T G C A T C G A G T C C T G A A C T G G T A C G T A C C G T A A C G T A C G T A C G T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T