Information for 6-AGAGATCACAAAGKGA (Motif 19)

C G T A C T A G C T G A C T A G G C T A C G A T A T G C C T G A A G T C C G T A C G T A G T C A C T A G C A T G A C T G C T G A
Reverse Opposite:
A G C T G T A C G T A C A G T C C A G T A C G T C G A T A C T G A G C T A T C G C G T A C A G T A G T C A G C T A G T C A C G T
p-value:1e-8
log p-value:-1.986e+01
Information Content per bp:1.738
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.8 +/- 23.9bp
Average Position of motif in Background49.9 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.83
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGAGATCACAAAGKGA
AAAAATAACAAACGG-
 C G T A C T A G C T G A C T A G G C T A C G A T A T G C C T G A A G T C C G T A C G T A G T C A C T A G C A T G A C T G C T G A
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGAGATCACAAAGKGA-
--ATGTCACAACAACAC
 C G T A C T A G C T G A C T A G G C T A C G A T A T G C C T G A A G T C C G T A C G T A G T C A C T A G C A T G A C T G C T G A A C G T
A C G T A C G T C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:AGAGATCACAAAGKGA
-------ACAAAG---
 C G T A C T A G C T G A C T A G G C T A C G A T A T G C C T G A A G T C C G T A C G T A G T C A C T A G C A T G A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGAGATCACAAAGKGA
----RNAACAATGG--
 C G T A C T A G C T G A C T A G G C T A C G A T A T G C C T G A A G T C C G T A C G T A G T C A C T A G C A T G A C T G C T G A
A C G T A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:AGAGATCACAAAGKGA
------RACAAWGG--
 C G T A C T A G C T G A C T A G G C T A C G A T A T G C C T G A A G T C C G T A C G T A G T C A C T A G C A T G A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGAGATCACAAAGKGA---
--NNTNNACAATGGGANNN
 C G T A C T A G C T G A C T A G G C T A C G A T A T G C C T G A A G T C C G T A C G T A G T C A C T A G C A T G A C T G C T G A A C G T A C G T A C G T
A C G T A C G T C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGAGATCACAAAGKGA
----VRRACAAWGG--
 C G T A C T A G C T G A C T A G G C T A C G A T A T G C C T G A A G T C C G T A C G T A G T C A C T A G C A T G A C T G C T G A
A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:AGAGATCACAAAGKGA
------AACAAAGG--
 C G T A C T A G C T G A C T A G G C T A C G A T A T G C C T G A A G T C C G T A C G T A G T C A C T A G C A T G A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGAGATCACAAAGKGA
-AAGGTCAC-------
 C G T A C T A G C T G A C T A G G C T A C G A T A T G C C T G A A G T C C G T A C G T A G T C A C T A G C A T G A C T G C T G A
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGAGATCACAAAGKGA
--AAACCACANN----
 C G T A C T A G C T G A C T A G G C T A C G A T A T G C C T G A A G T C C G T A C G T A G T C A C T A G C A T G A C T G C T G A
A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T