Information for 3-TCATGCTATTAGC (Motif 4)

C G A T G T A C C G T A A G C T A C T G A G T C A C G T G T C A A C G T A C G T C G T A A C T G A T G C
Reverse Opposite:
A T C G G T A C A C G T C G T A C G T A A C G T C G T A A C T G A G T C C T G A A C G T A C T G C G T A
p-value:1e-11
log p-value:-2.686e+01
Information Content per bp:1.912
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.2 +/- 21.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCATGCTATTAGC-
AAAAACCATTAAGG
 C G A T G T A C C G T A A G C T A C T G A G T C A C G T G T C A A C G T A C G T C G T A A C T G A T G C A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCATGCTATTAGC
TAATYNRATTAR-
 C G A T G T A C C G T A A G C T A C T G A G T C A C G T G T C A A C G T A C G T C G T A A C T G A T G C
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G A C G T

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TCATGCTATTAGC
----GCAATTAG-
 C G A T G T A C C G T A A G C T A C T G A G T C A C G T G T C A A C G T A C G T C G T A A C T G A T G C
A C G T A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TCATGCTATTAGC
----BCMATTAG-
 C G A T G T A C C G T A A G C T A C T G A G T C A C G T G T C A A C G T A C G T C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TCATGCTATTAGC
---NNCAATTANN
 C G A T G T A C C G T A A G C T A C T G A G T C A C G T G T C A A C G T A C G T C G T A A C T G A T G C
A C G T A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCATGCTATTAGC
TAATTNVATTAN-
 C G A T G T A C C G T A A G C T A C T G A G T C A C G T G T C A A C G T A C G T C G T A A C T G A T G C
G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TCATGCTATTAGC
GATAACATCCTAGTAG-
 A C G T A C G T A C G T A C G T C G A T G T A C C G T A A G C T A C T G A G T C A C G T G T C A A C G T A C G T C G T A A C T G A T G C
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCATGCTATTAGC
TAATTTAATTA--
 C G A T G T A C C G T A A G C T A C T G A G T C A C G T G T C A A C G T A C G T C G T A A C T G A T G C
G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCATGCTATTAGC
TAATTTAATTA--
 C G A T G T A C C G T A A G C T A C T G A G T C A C G T G T C A A C G T A C G T C G T A A C T G A T G C
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T A C G T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCATGCTATTAGC
TAATCHGATTAC-
 C G A T G T A C C G T A A G C T A C T G A G T C A C G T G T C A A C G T A C G T C G T A A C T G A T G C
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C A C G T