Information for 8-GGGAGCCGTAGCA (Motif 12)

A C T G A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C G T C T G A A C T G G T A C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G C T C G T A A G T C A C T G A C T G A G T C A C G T G T A C A G T C A G T C
p-value:1e-9
log p-value:-2.083e+01
Information Content per bp:1.935
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.2 +/- 24.6bp
Average Position of motif in Background71.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------GGGAGCCGTAGCA----
RGGCAMTAGGGAGCCATRGAAGGTK
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C G T C T G A A C T G G T A C C G T A A C G T A C G T A C G T A C G T
C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGGAGCCGTAGCA
CGGAGC-------
 A C T G A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C G T C T G A A C T G G T A C C G T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGGAGCCGTAGCA
--GAGSCCGAGC-
 A C T G A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C G T C T G A A C T G G T A C C G T A
A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGGAGCCGTAGCA---------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C G T C T G A A C T G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

GFY(?)/Promoter/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGGAGCCGTAGCA
GGGAATTGTAGT-
 A C T G A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C G T C T G A A C T G G T A C C G T A
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGGAGCCGTAGCA-
NGTTGCCATGGCAA
 A C T G A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C G T C T G A A C T G G T A C C G T A A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGGAGCCGTAGCA-----
---TACCATAGCAACGGT
 A C T G A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C G T C T G A A C T G G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGGAGCCGTAGCA--
-GTTGCCATGGCAAC
 A C T G A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C G T C T G A A C T G G T A C C G T A A C G T A C G T
A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGAGCCGTAGCA-
GGTTGCCATGGCAA
 A C T G A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C G T C T G A A C T G G T A C C G T A A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGGAGCCGTAGCA--
CGGTTGCCATGGCAAC
 A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C G T C T G A A C T G G T A C C G T A A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C