Information for 2-TGCAGTCAAT (Motif 2)

A C G T A C T G A T G C C G T A A C T G A G C T A G T C C G T A C G T A A C G T
Reverse Opposite:
C G T A G A C T C G A T C T A G C T G A A G T C A C G T A T C G A G T C C G T A
p-value:1e-16
log p-value:-3.714e+01
Information Content per bp:1.869
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.3 +/- 27.2bp
Average Position of motif in Background63.2 +/- 4.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGCAGTCAAT--
ATTTGCATACAATGG
 A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C T G A G C T A G T C C G T A C G T A A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGCAGTCAAT--
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C T G A G C T A G T C C G T A C G T A A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TGCAGTCAAT---
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C T G A G C T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGCAGTCAAT
-GCTGTCAA-
 A C G T A C T G A T G C C G T A A C T G A G C T A G T C C G T A C G T A A C G T
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGCAGTCAAT
-BCAGACWA-
 A C G T A C T G A T G C C G T A A C T G A G C T A G T C C G T A C G T A A C G T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGCAGTCAAT---
-NCTGTCAATCAN
 A C G T A C T G A T G C C G T A A C T G A G C T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Nr2e1/MA0676.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGCAGTCAAT
AAAAGTCAA-
 A C G T A C T G A T G C C G T A A C T G A G C T A G T C C G T A C G T A A C G T
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TGCAGTCAAT--
AACTAGCTGTCAATAC
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C T G A G C T A G T C C G T A C G T A A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCAGTCAAT
HNRAATCAAT
 A C G T A C T G A T G C C G T A A C T G A G C T A G T C C G T A C G T A A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGCAGTCAAT-
-GCAGTGATTT
 A C G T A C T G A T G C C G T A A C T G A G C T A G T C C G T A C G T A A C G T A C G T
A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T