Information for 4-CTTGKGTSAGCTGGCA (Motif 13)

A G T C A G C T A C G T A T C G A C T G A C T G C A G T T A C G C G T A A T C G A G T C A C G T A C T G A C T G G T A C G T C A
Reverse Opposite:
A C G T C A T G A G T C G T A C C G T A C T A G T A G C C G A T A T G C G T C A G T A C G T A C A T G C G T C A C T G A C T A G
p-value:1e-11
log p-value:-2.633e+01
Information Content per bp:1.732
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.2 +/- 29.9bp
Average Position of motif in Background60.1 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:CTTGKGTSAGCTGGCA-
--------GGTTGGCAT
 A G T C A G C T A C G T A T C G A C T G A C T G C A G T T A C G C G T A A T C G A G T C A C G T A C T G A C T G G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.59
Offset:10
Orientation:forward strand
Alignment:CTTGKGTSAGCTGGCA
----------TTGGCA
 A G T C A G C T A C G T A T C G A C T G A C T G C A G T T A C G C G T A A T C G A G T C A C G T A C T G A C T G G T A C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.59
Offset:9
Orientation:reverse strand
Alignment:CTTGKGTSAGCTGGCA--
---------NTTGGCANN
 A G T C A G C T A C G T A T C G A C T G A C T G C A G T T A C G C G T A A T C G A G T C A C G T A C T G A C T G G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTTGKGTSAGCTGGCA--
AACCGGTTNNAACCGGTTTN
 A C G T A C G T A G T C A G C T A C G T A T C G A C T G A C T G C A G T T A C G C G T A A T C G A G T C A C G T A C T G A C T G G T A C G T C A A C G T A C G T
C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T C T A G C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T A C T G

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTTGKGTSAGCTGGCA----
----NGTAGGTTGGCATNNN
 A G T C A G C T A C G T A T C G A C T G A C T G C A G T T A C G C G T A A T C G A G T C A C G T A C T G A C T G G T A C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.57
Offset:9
Orientation:reverse strand
Alignment:CTTGKGTSAGCTGGCA-
---------CTTGGCAA
 A G T C A G C T A C G T A T C G A C T G A C T G C A G T T A C G C G T A A T C G A G T C A C G T A C T G A C T G G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTTGKGTSAGCTGGCA
---VNAVCAGCTGGC-
 A G T C A G C T A C G T A T C G A C T G A C T G C A G T T A C G C G T A A T C G A G T C A C G T A C T G A C T G G T A C G T C A
A C G T A C G T A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CTTGKGTSAGCTGGCA
----NAHCAGCTGD--
 A G T C A G C T A C G T A T C G A C T G A C T G C A G T T A C G C G T A A T C G A G T C A C G T A C T G A C T G G T A C G T C A
A C G T A C G T A C G T A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:CTTGKGTSAGCTGGCA--
--------NNTTGGCANN
 A G T C A G C T A C G T A T C G A C T G A C T G C A G T T A C G C G T A A T C G A G T C A C G T A C T G A C T G G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTTGKGTSAGCTGGCA
NNTGTTTATTTTGGCA
 A G T C A G C T A C G T A T C G A C T G A C T G C A G T T A C G C G T A A T C G A G T C A C G T A C T G A C T G G T A C G T C A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A