Information for 5-RGAATTCCMN (Motif 4)

C T A G T C A G T G C A C G T A C G A T A C G T A G T C A G T C G T A C C T G A
Reverse Opposite:
G A C T C A T G C T A G C T A G T G C A C G T A C G A T A C G T A G T C G A T C
p-value:1e-19
log p-value:-4.557e+01
Information Content per bp:1.627
Number of Target Sequences with motif150.0
Percentage of Target Sequences with motif16.89%
Number of Background Sequences with motif3550.8
Percentage of Background Sequences with motif7.50%
Average Position of motif in Targets50.8 +/- 25.3bp
Average Position of motif in Background49.6 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:RGAATTCCMN-
-GCATTCCAGN
 C T A G T C A G T G C A C G T A C G A T A C G T A G T C A G T C G T A C C T G A A C G T
A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:2
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:RGAATTCCMN-
-RCATTCCWGG
 C T A G T C A G T G C A C G T A C G A T A C G T A G T C A G T C G T A C C T G A A C G T
A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G

TEAD3/MA0808.1/Jaspar

Match Rank:3
Score:0.82
Offset:1
Orientation:forward strand
Alignment:RGAATTCCMN
-ACATTCCA-
 C T A G T C A G T G C A C G T A C G A T A C G T A G T C A G T C G T A C C T G A
A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:forward strand
Alignment:RGAATTCCMN
CACATTCCAT
 C T A G T C A G T G C A C G T A C G A T A C G T A G T C A G T C G T A C C T G A
G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:RGAATTCCMN-
-RCATTCCWGG
 C T A G T C A G T G C A C G T A C G A T A C G T A G T C A G T C G T A C C T G A A C G T
A C G T C T G A T G A C C T G A A C G T C G A T A G T C A G T C G C T A C T A G T A C G

TEAD1/MA0090.2/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:RGAATTCCMN
CACATTCCAT
 C T A G T C A G T G C A C G T A C G A T A C G T A G T C A G T C G T A C C T G A
G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-RGAATTCCMN
GGAAATTCCC-
 A C G T C T A G T C A G T G C A C G T A C G A T A C G T A G T C A G T C G T A C C T G A
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-RGAATTCCMN-
GGGAAATCCCCN
 A C G T C T A G T C A G T G C A C G T A C G A T A C G T A G T C A G T C G T A C C T G A A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

REL/MA0101.1/Jaspar

Match Rank:9
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:RGAATTCCMN
GGAAANCCCC
 C T A G T C A G T G C A C G T A C G A T A C G T A G T C A G T C G T A C C T G A
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-RGAATTCCMN
GGAAATTCCC-
 A C G T C T A G T C A G T G C A C G T A C G A T A C G T A G T C A G T C G T A C C T G A
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T