Information for 14-AGCTCACAGCAGA (Motif 16)

C G T A A C T G A T G C A C G T A G T C C G T A G T A C G T C A T A C G A G T C C G T A A C T G C T G A
Reverse Opposite:
A G C T A G T C A C G T A C T G A T G C A C G T A C T G A C G T A C T G C G T A A T C G T G A C A C G T
p-value:1e-9
log p-value:-2.087e+01
Information Content per bp:1.860
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.9 +/- 18.5bp
Average Position of motif in Background50.8 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:4
Orientation:forward strand
Alignment:AGCTCACAGCAGA---
----CACAGCAGGGGG
 C G T A A C T G A T G C A C G T A G T C C G T A G T A C G T C A T A C G A G T C C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGCTCACAGCAGA---
-CCACACAGCAGGAGA
 C G T A A C T G A T G C A C G T A G T C C G T A G T A C G T C A T A C G A G T C C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGCTCACAGCAGA---
-GAGCACAGCAGGACA
 C G T A A C T G A T G C A C G T A G T C C G T A G T A C G T C A T A C G A G T C C G T A A C T G C T G A A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGCTCACAGCAGA---
-CCACACAGCAGGAGA
 C G T A A C T G A T G C A C G T A G T C C G T A G T A C G T C A T A C G A G T C C G T A A C T G C T G A A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGCTCACAGCAGA-----
---DCHCAGCAGGRGGCC
 C G T A A C T G A T G C A C G T A G T C C G T A G T A C G T C A T A C G A G T C C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGCTCACAGCAGA
CNGTCACGCCAC-
 C G T A A C T G A T G C A C G T A G T C C G T A G T A C G T C A T A C G A G T C C G T A A C T G C T G A
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGCTCACAGCAGA
--ATCACCCCAT-
 C G T A A C T G A T G C A C G T A G T C C G T A G T A C G T C A T A C G A G T C C G T A A C T G C T G A
A C G T A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGCTCACAGCAGA
ACATCAAAGG---
 C G T A A C T G A T G C A C G T A G T C C G T A G T A C G T C A T A C G A G T C C G T A A C T G C T G A
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGCTCACAGCAGA
--ATCACCCCAT-
 C G T A A C T G A T G C A C G T A G T C C G T A G T A C G T C A T A C G A G T C C G T A A C T G C T G A
A C G T A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGCTCACAGCAGA
---DCTCAGCAGG
 C G T A A C T G A T G C A C G T A G T C C G T A G T A C G T C A T A C G A G T C C G T A A C T G C T G A
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G