Information for 5-TVWTTGTKKRSWCAGV (Motif 8)

G C A T T C G A G C A T A C G T C G A T T A C G G A C T C A T G C A G T C T A G A T C G G C T A T G A C G T C A A C T G T A G C
Reverse Opposite:
A T C G G T A C A C G T A C T G C G A T T A C G G A T C G T C A G T A C C T G A A T G C G C T A T G C A C G T A A G C T C G T A
p-value:1e-14
log p-value:-3.384e+01
Information Content per bp:1.559
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.61%
Number of Background Sequences with motif271.7
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets52.1 +/- 24.5bp
Average Position of motif in Background51.0 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TVWTTGTKKRSWCAGV---
--NSTGTTTRCWCAGBNNN
 G C A T T C G A G C A T A C G T C G A T T A C G G A C T C A T G C A G T C T A G A T C G G C T A T G A C G T C A A C T G T A G C A C G T A C G T A C G T
A C G T A C G T G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TVWTTGTKKRSWCAGV
CCATTGTATGCAAAT-
 G C A T T C G A G C A T A C G T C G A T T A C G G A C T C A T G C A G T C T A G A T C G G C T A T G A C G T C A A C T G T A G C
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TVWTTGTKKRSWCAGV--
-NTNTATGTGCACATNNN
 G C A T T C G A G C A T A C G T C G A T T A C G G A C T C A T G C A G T C T A G A T C G G C T A T G A C G T C A A C T G T A G C A C G T A C G T
A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

Foxa2/MA0047.2/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TVWTTGTKKRSWCAGV
----TGTTTACTTAGG
 G C A T T C G A G C A T A C G T C G A T T A C G G A C T C A T G C A G T C T A G A T C G G C T A T G A C G T C A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G

PB0016.1_Foxj1_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TVWTTGTKKRSWCAGV
NNNNTTTGTTTACNNT--
 A C G T A C G T G C A T T C G A G C A T A C G T C G A T T A C G G A C T C A T G C A G T C T A G A T C G G C T A T G A C G T C A A C T G T A G C
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TVWTTGTKKRSWCAGV--
-NNGTATGTGCACATNNN
 G C A T T C G A G C A T A C G T C G A T T A C G G A C T C A T G C A G T C T A G A T C G G C T A T G A C G T C A A C T G T A G C A C G T A C G T
A C G T C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

FOXA1/MA0148.3/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TVWTTGTKKRSWCAGV
TCCATGTTTACTTTG-
 G C A T T C G A G C A T A C G T C G A T T A C G G A C T C A T G C A G T C T A G A T C G G C T A T G A C G T C A A C T G T A G C
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G A C G T

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TVWTTGTKKRSWCAGV
--ATTGTTTAN-----
 G C A T T C G A G C A T A C G T C G A T T A C G G A C T C A T G C A G T C T A G A T C G G C T A T G A C G T C A A C T G T A G C
A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C A C G T A C G T A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TVWTTGTKKRSWCAGV
-BSNTGTTTACWYWGN
 G C A T T C G A G C A T A C G T C G A T T A C G G A C T C A T G C A G T C T A G A T C G G C T A T G A C G T C A A C T G T A G C
A C G T A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

FOXC2/MA0846.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TVWTTGTKKRSWCAGV
--TTTGTTTACTTA--
 G C A T T C G A G C A T A C G T C G A T T A C G G A C T C A T G C A G T C T A G A T C G G C T A T G A C G T C A A C T G T A G C
A C G T A C G T C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A A C G T A C G T