Information for 13-CTGTCTCCTTATA (Motif 12)

G T A C A C G T A T C G A C G T A G T C A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A C G A T C G T A C G T A A C T G A C T G C G T A A C T G C G T A A T G C C G T A A C T G
p-value:1e-10
log p-value:-2.482e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.2 +/- 12.7bp
Average Position of motif in Background92.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CTGTCTCCTTATA-----
------CCTTTTATAGNC
 G T A C A C G T A T C G A C G T A G T C A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTGTCTCCTTATA
CAGCTGTTTCCT----
 A C G T A C G T A C G T G T A C A C G T A T C G A C G T A G T C A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A
G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T A C G T A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTGTCTCCTTATA-
----AACCTTATAT
 G T A C A C G T A T C G A C G T A G T C A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTGTCTCCTTATA-
TACGAGACTCCTCTAAC
 A C G T A C G T A C G T G T A C A C G T A T C G A C G T A G T C A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

MEF2A/MA0052.3/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTGTCTCCTTATA--
---TCTATTTTTAGA
 G T A C A C G T A T C G A C G T A G T C A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A

MEF2D/MA0773.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTGTCTCCTTATA--
---TCTATTTATAGN
 G T A C A C G T A T C G A C G T A G T C A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T

PB0198.1_Zfp128_2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTGTCTCCTTATA--
-TGTATATATATACC
 G T A C A C G T A T C G A C G T A G T C A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A A C G T A C G T
A C G T C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGTCTCCTTATA
-TGTTTACTTT--
 G T A C A C G T A T C G A C G T A G T C A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A
A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGTCTCCTTATA
-TGTTTACTTT--
 G T A C A C G T A T C G A C G T A G T C A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A
A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTCCTTATA---
GCAACCTCATTATNNNN
 A C G T G T A C A C G T A T C G A C G T A G T C A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T