Information for 13-CAGACGGAGC (Motif 21)

A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A G T C A G T C A C T G C G A T A G T C A C G T A C T G
p-value:1e-7
log p-value:-1.781e+01
Information Content per bp:1.960
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.6 +/- 19.4bp
Average Position of motif in Background49.4 +/- 15.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.77
Offset:4
Orientation:reverse strand
Alignment:CAGACGGAGC
----CGGAGC
 A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAGACGGAGC
CCAGACAG---
 A C G T A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A A C T G A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGACGGAGC
CCAGACRSVB-
 A C G T A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A A C T G A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGACGGAGC
GAGSCCGAGC
 A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A A C T G A G T C
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CAGACGGAGC
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A A C T G A G T C
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CAGACGGAGC-
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A A C T G A G T C A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGACGGAGC
RGKGGGCGGAGC
 A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A A C T G A G T C
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAGACGGAGC
AACAGATGGC--
 A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A A C T G A G T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CAGACGGAGC-
------CAGCC
 A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGACGGAGC
AACAGATGGT--
 A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A A C T G A G T C
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T