Information for 5-RCAAACCACA (Motif 3)

C T G A A T G C C G T A C T G A C T G A A G T C A G T C T C G A A G T C C G T A
Reverse Opposite:
A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T T A C G G A C T
p-value:1e-20
log p-value:-4.652e+01
Information Content per bp:1.766
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif4.98%
Number of Background Sequences with motif351.7
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets54.8 +/- 26.4bp
Average Position of motif in Background49.7 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.97
Offset:1
Orientation:forward strand
Alignment:RCAAACCACA-
-NAAACCACAG
 C T G A A T G C C G T A C T G A C T G A A G T C A G T C T C G A A G T C C G T A A C G T
A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.96
Offset:2
Orientation:forward strand
Alignment:RCAAACCACA--
--AAACCACANN
 C T G A A T G C C G T A C T G A C T G A A G T C A G T C T C G A A G T C C G T A A C G T A C G T
A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:RCAAACCACA---
--AAACCACAGAN
 C T G A A T G C C G T A C T G A C T G A A G T C A G T C T C G A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:RCAAACCACA--
--AAACCACAGC
 C T G A A T G C C G T A C T G A C T G A A G T C A G T C T C G A A G T C C G T A A C G T A C G T
A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.93
Offset:1
Orientation:forward strand
Alignment:RCAAACCACA---
-NWAACCACADNN
 C T G A A T G C C G T A C T G A C T G A A G T C A G T C T C G A A G T C C G T A A C G T A C G T A C G T
A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX3/MA0684.1/Jaspar

Match Rank:6
Score:0.90
Offset:2
Orientation:forward strand
Alignment:RCAAACCACA--
--AAACCGCAAA
 C T G A A T G C C G T A C T G A C T G A A G T C A G T C T C G A A G T C C G T A A C G T A C G T
A C G T A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A

RUNX2/MA0511.2/Jaspar

Match Rank:7
Score:0.90
Offset:2
Orientation:forward strand
Alignment:RCAAACCACA-
--AAACCGCAA
 C T G A A T G C C G T A C T G A C T G A A G T C A G T C T C G A A G T C C G T A A C G T
A C G T A C G T G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A

FOXH1/MA0479.1/Jaspar

Match Rank:8
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-RCAAACCACA
TCCAATCCACA
 A C G T C T G A A T G C C G T A C T G A C T G A A G T C A G T C T C G A A G T C C G T A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:RCAAACCACA--
SSAATCCACANN
 C T G A A T G C C G T A C T G A C T G A A G T C A G T C T C G A A G T C C G T A A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.69
Offset:3
Orientation:forward strand
Alignment:RCAAACCACA
---ATCCAC-
 C T G A A T G C C G T A C T G A C T G A A G T C A G T C T C G A A G T C C G T A
A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T