Information for 8-GGWCAGNACM (Motif 12)

C A T G C T A G C G T A T A G C C G T A A C T G G A C T C G T A G A T C T G A C
Reverse Opposite:
A C T G C T A G G C A T C T G A T G A C G C A T A T C G G C A T G A T C G T A C
p-value:1e-6
log p-value:-1.451e+01
Information Content per bp:1.574
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.12%
Number of Background Sequences with motif224.9
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets49.4 +/- 30.3bp
Average Position of motif in Background50.2 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGWCAGNACM
AGGTCA-----
 A C G T C A T G C T A G C G T A T A G C C G T A A C T G G A C T C G T A G A T C T G A C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGWCAGNACM
TRAGGTCA-----
 A C G T A C G T A C G T C A T G C T A G C G T A T A G C C G T A A C T G G A C T C G T A G A T C T G A C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGWCAGNACM
AGRGGTCA-----
 A C G T A C G T A C G T C A T G C T A G C G T A T A G C C G T A A C T G G A C T C G T A G A T C T G A C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GGWCAGNACM
CCAGGAACAG----
 A C G T A C G T A C G T A C G T C A T G C T A G C G T A T A G C C G T A A C T G G A C T C G T A G A T C T G A C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGWCAGNACM
-CACAGN---
 C A T G C T A G C G T A T A G C C G T A A C T G G A C T C G T A G A T C T G A C
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GGWCAGNACM
CAAAGGTCAG----
 A C G T A C G T A C G T A C G T C A T G C T A G C G T A T A G C C G T A A C T G G A C T C G T A G A T C T G A C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGWCAGNACM
ATCAAGGTCA-----
 A C G T A C G T A C G T A C G T A C G T C A T G C T A G C G T A T A G C C G T A A C T G G A C T C G T A G A T C T G A C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGWCAGNACM
AAGGTCAC----
 A C G T A C G T C A T G C T A G C G T A T A G C C G T A A C T G G A C T C G T A G A T C T G A C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:9
Score:0.60
Offset:-10
Orientation:reverse strand
Alignment:----------GGWCAGNACM
TCAGCACCATGGACAGCTCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C G T A T A G C C G T A A C T G G A C T C G T A G A T C T G A C
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GGWCAGNACM
TGAGTCAGCA--
 A C G T A C G T C A T G C T A G C G T A T A G C C G T A A C T G G A C T C G T A G A T C T G A C
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T