Information for 10-GCCAGGGTKGCTCCAT (Motif 9)

A T C G A G T C G A T C C G T A A T C G T A C G T A C G A G C T C A G T A T C G A G T C A C G T T G A C A T G C G C T A A C G T
Reverse Opposite:
C G T A C G A T A T C G A C T G C G T A C T A G A T G C G T C A C T G A A T G C A T G C A T G C A C G T C A T G T A C G T A G C
p-value:1e-13
log p-value:-3.132e+01
Information Content per bp:1.731
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.5 +/- 22.4bp
Average Position of motif in Background7.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:GCCAGGGTKGCTCCAT----
--------GGCTCYAKCAYC
 A T C G A G T C G A T C C G T A A T C G T A C G T A C G A G C T C A G T A T C G A G T C A C G T T G A C A T G C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.51
Offset:9
Orientation:forward strand
Alignment:GCCAGGGTKGCTCCAT
---------GCTCCG-
 A T C G A G T C G A T C C G T A A T C G T A C G T A C G A G C T C A G T A T C G A G T C A C G T T G A C A T G C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GCCAGGGTKGCTCCAT
-----CNGTCCTCCC-
 A T C G A G T C G A T C C G T A A T C G T A C G T A C G A G C T C A G T A T C G A G T C A C G T T G A C A T G C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GCCAGGGTKGCTCCAT
GTCACGCTCNCTGA--
 A T C G A G T C G A T C C G T A A T C G T A C G T A C G A G C T C A G T A T C G A G T C A C G T T G A C A T G C G C T A A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.46
Offset:-3
Orientation:forward strand
Alignment:---GCCAGGGTKGCTCCAT
CGTGCCAAG----------
 A C G T A C G T A C G T A T C G A G T C G A T C C G T A A T C G T A C G T A C G A G C T C A G T A T C G A G T C A C G T T G A C A T G C G C T A A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:6
Score:0.46
Offset:7
Orientation:forward strand
Alignment:GCCAGGGTKGCTCCAT--
-------GTCCGCCATTA
 A T C G A G T C G A T C C G T A A T C G T A C G T A C G A G C T C A G T A T C G A G T C A C G T T G A C A T G C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.46
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGGGTKGCTCCAT
TGCCAA-----------
 A C G T A T C G A G T C G A T C C G T A A T C G T A C G T A C G A G C T C A G T A T C G A G T C A C G T T G A C A T G C G C T A A C G T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.45
Offset:-2
Orientation:forward strand
Alignment:--GCCAGGGTKGCTCCAT
TTGCCAAG----------
 A C G T A C G T A T C G A G T C G A T C C G T A A T C G T A C G T A C G A G C T C A G T A T C G A G T C A C G T T G A C A T G C G C T A A C G T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:9
Score:0.45
Offset:7
Orientation:reverse strand
Alignment:GCCAGGGTKGCTCCAT-----
-------NNGCACCTTTCTCC
 A T C G A G T C G A T C C G T A A T C G T A C G T A C G A G C T C A G T A T C G A G T C A C G T T G A C A T G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

HLTF/MA0109.1/Jaspar

Match Rank:10
Score:0.44
Offset:10
Orientation:forward strand
Alignment:GCCAGGGTKGCTCCAT----
----------AACCTTATAT
 A T C G A G T C G A T C C G T A A T C G T A C G T A C G A G C T C A G T A T C G A G T C A C G T T G A C A T G C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T