Information for 6-TCCCCTYGCTGCTAGV (Motif 5)

A G C T G A T C G A T C A G T C A G T C A G C T A G T C A T C G A G T C C G A T A C T G G T A C A G C T G T C A C A T G T A C G
Reverse Opposite:
A T G C G T A C A C G T C T G A C A T G A G T C G C T A C T A G T A G C T C A G T C G A C T A G C T A G C T A G C A T G T C G A
p-value:1e-14
log p-value:-3.427e+01
Information Content per bp:1.616
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif52.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets46.8 +/- 23.0bp
Average Position of motif in Background44.8 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC3/MA0697.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCCCCTYGCTGCTAGV
GACCCCCCGCTGCGC--
 A C G T A G C T G A T C G A T C A G T C A G T C A G C T A G T C A T C G A G T C C G A T A C T G G T A C A G C T G T C A C A T G T A C G
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TCCCCTYGCTGCTAGV
----CCTGCTGAGH--
 A G C T G A T C G A T C A G T C A G T C A G C T A G T C A T C G A G T C C G A T A C T G G T A C A G C T G T C A C A T G T A C G
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCCCCTYGCTGCTAGV
GGCCYCCTGCTGDGH--
 A C G T A G C T G A T C G A T C A G T C A G T C A G C T A G T C A T C G A G T C C G A T A C T G G T A C A G C T G T C A C A T G T A C G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCCCCTYGCTGCTAGV
-CCCCCTGCTGTG---
 A G C T G A T C G A T C A G T C A G T C A G C T A G T C A T C G A G T C C G A T A C T G G T A C A G C T G T C A C A T G T A C G
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCCCCTYGCTGCTAGV
-TCNCCTGCTGNGNNN
 A G C T G A T C G A T C A G T C A G T C A G C T A G T C A T C G A G T C C G A T A C T G G T A C A G C T G T C A C A T G T A C G
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TCCCCTYGCTGCTAGV---
----NCCGTTGCTANGNGN
 A G C T G A T C G A T C A G T C A G T C A G C T A G T C A T C G A G T C C G A T A C T G G T A C A G C T G T C A C A T G T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCCCCTYGCTGCTAGV
GACCCCCCGCTGTG---
 A C G T A G C T G A T C G A T C A G T C A G T C A G C T A G T C A T C G A G T C C G A T A C T G G T A C A G C T G T C A C A T G T A C G
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCCCCTYGCTGCTAGV
GACCCCCCGCTGTGC--
 A C G T A G C T G A T C G A T C A G T C A G T C A G C T A G T C A T C G A G T C C G A T A C T G G T A C A G C T G T C A C A T G T A C G
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TCCCCTYGCTGCTAGV---
----NNCGTTGCTATGGNN
 A G C T G A T C G A T C A G T C A G T C A G C T A G T C A T C G A G T C C G A T A C T G G T A C A G C T G T C A C A T G T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TCCCCTYGCTGCTAGV
-TNTCCTGCTGTGNNG
 A G C T G A T C G A T C A G T C A G T C A G C T A G T C A T C G A G T C C G A T A C T G G T A C A G C T G T C A C A T G T A C G
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G