Information for 6-TGGCTTGAGT (Motif 13)

A C G T A C T G A T C G A G T C A C G T C G A T A C T G C G T A A C T G G C A T
Reverse Opposite:
C G T A G T A C C G A T A G T C G C T A C G T A T C A G A T G C A G T C G T C A
p-value:1e-7
log p-value:-1.792e+01
Information Content per bp:1.839
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif94.6
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets48.9 +/- 25.5bp
Average Position of motif in Background49.4 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TGGCTTGAGT----
---CTTGAGTGGCT
 A C G T A C T G A T C G A G T C A C G T C G A T A C T G C G T A A C T G G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTTGAGT
ATGGGGTGAT-
 A C G T A C G T A C T G A T C G A G T C A C G T C G A T A C T G C G T A A C T G G C A T
T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTTGAGT-
GTGGCGTGACNG
 A C G T A C G T A C T G A T C G A G T C A C G T C G A T A C T G C G T A A C T G G C A T A C G T
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

SREBF1/MA0595.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTTGAGT
GTGGGGTGAT-
 A C G T A C G T A C T G A T C G A G T C A C G T C G A T A C T G C G T A A C T G G C A T
T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGGCTTGAGT---
---CTYRAGTGSY
 A C G T A C T G A T C G A G T C A C G T C G A T A C T G C G T A A C T G G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

SREBF2/MA0596.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGGCTTGAGT
ATGGGGTGAT-
 A C G T A C G T A C T G A T C G A G T C A C G T C G A T A C T G C G T A A C T G G C A T
T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGGCTTGAGT---
---BTBRAGTGSN
 A C G T A C T G A T C G A G T C A C G T C G A T A C T G C G T A A C T G G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGGCTTGAGT----
----TTGAGTGSTT
 A C G T A C T G A T C G A G T C A C G T C G A T A C T G C G T A A C T G G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGGCTTGAGT----
----TTRAGTGSYK
 A C G T A C T G A T C G A G T C A C G T C G A T A C T G C G T A A C T G G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGCTTGAGT
TTGGCA-----
 A C G T A C G T A C T G A T C G A G T C A C G T C G A T A C T G C G T A A C T G G C A T
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T