Information for 19-ATGTCTGCAGGGA (Motif 19)

T C G A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G C G T A
Reverse Opposite:
A C G T A G T C G A T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T
p-value:1e-8
log p-value:-2.052e+01
Information Content per bp:1.941
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.8 +/- 14.0bp
Average Position of motif in Background45.4 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ATGTCTGCAGGGA
VBSYGTCTGG-----
 A C G T A C G T T C G A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATGTCTGCAGGGA
CTGTCTGG-----
 T C G A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ATGTCTGCAGGGA
TWGTCTGV-----
 T C G A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----ATGTCTGCAGGGA
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T T C G A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ATGTCTGCAGGGA
-NGTCCCNNGGGA
 T C G A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G C G T A
A C G T C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ATGTCTGCAGGGA----
NNNANTGCAGTGCNNTT
 T C G A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G C G T A A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ATGTCTGCAGGGA---
-RGSMTBCTGGGAAAT
 T C G A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G C G T A A C G T A C G T A C G T
A C G T C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ATGTCTGCAGGGA-
--CACAGCAGGGGG
 T C G A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G C G T A A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ATGTCTGCAGGGA
SCTGTCARCACC--
 A C G T T C G A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G C G T A
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-ATGTCTGCAGGGA
TGAGTCAGCA----
 A C G T T C G A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G C G T A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T