Information for 25-CATGTGTCANACACGT (Motif 45)

A G T C C G T A G A C T T C A G A G C T A C T G A C G T A T G C C G T A A G T C C G T A A G T C C T G A G A T C T A C G C G A T
Reverse Opposite:
C G T A A T G C C T A G G A C T A C T G C G A T A C T G A C G T A T C G G T C A A G T C C T G A A G T C C T G A A C G T A C T G
p-value:1e-5
log p-value:-1.286e+01
Information Content per bp:1.750
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.2 +/- 27.1bp
Average Position of motif in Background58.8 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CATGTGTCANACACGT
-AGGTGHCAGACA---
 A G T C C G T A G A C T T C A G A G C T A C T G A C G T A T G C C G T A A G T C C G T A A G T C C T G A G A T C T A C G C G A T
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CATGTGTCANACACGT
-AGGTGTGAAM-----
 A G T C C G T A G A C T T C A G A G C T A C T G A C G T A T G C C G T A A G T C C G T A A G T C C T G A G A T C T A C G C G A T
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CATGTGTCANACACGT
-AGGTGNCAGACAG--
 A G T C C G T A G A C T T C A G A G C T A C T G A C G T A T G C C G T A A G T C C G T A A G T C C T G A G A T C T A C G C G A T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CATGTGTCANACACGT---
VCAKCTGGNNNCCAGMTGBN
 A C G T A G T C C G T A G A C T T C A G A G C T A C T G A C G T A T G C C G T A A G T C C G T A A G T C C T G A G A T C T A C G C G A T A C G T A C G T A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C

Npas2/MA0626.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CATGTGTCANACACGT
GGCACGTGTC--------
 A C G T A C G T A G T C C G T A G A C T T C A G A G C T A C T G A C G T A T G C C G T A A G T C C G T A A G T C C T G A G A T C T A C G C G A T
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CATGTGTCANACACGT
TGACAGGTGTCA-------
 A C G T A C G T A C G T A G T C C G T A G A C T T C A G A G C T A C T G A C G T A T G C C G T A A G T C C G T A A G T C C T G A G A T C T A C G C G A T
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hes2/MA0616.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CATGTGTCANACACGT
GCACGTGTCNNNN----
 A C G T A G T C C G T A G A C T T C A G A G C T A C T G A C G T A T G C C G T A A G T C C G T A A G T C C T G A G A T C T A C G C G A T
A C T G A G T C C G T A A G T C A C T G A G C T A C T G A G C T A T G C A C T G C G A T C G A T C G T A A C G T A C G T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CATGTGTCANACACGT
ACCATATGTT--------
 A C G T A C G T A G T C C G T A G A C T T C A G A G C T A C T G A C G T A T G C C G T A A G T C C G T A A G T C C T G A G A T C T A C G C G A T
C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX4/MA0806.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CATGTGTCANACACGT
-AGGTGTGA-------
 A G T C C G T A G A C T T C A G A G C T A C T G A C G T A T G C C G T A A G T C C G T A A G T C C T G A G A T C T A C G C G A T
A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CATGTGTCANACACGT
--SCTGTCAVTCAV--
 A G T C C G T A G A C T T C A G A G C T A C T G A C G T A T G C C G T A A G T C C G T A A G T C C T G A G A T C T A C G C G A T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T