Information for 22-AGCAAGGGAGACG (Motif 42)

C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T
p-value:1e-6
log p-value:-1.438e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.3 +/- 18.1bp
Average Position of motif in Background54.0 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCAAGGGAGACG
CGGAAGTGAAAC-
 C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A C T G
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGCAAGGGAGACG
TCAGNGAGCGTGAC-
 A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A C T G
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T

IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGCAAGGGAGACG
-GRAASTGAAAST
 C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A C T G
A C G T T C A G T C A G G C T A C G T A T A C G G A C T T C A G T C G A C T G A C G T A T A C G G A C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---AGCAAGGGAGACG
CACAGCAGGGGG----
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.51
Offset:-6
Orientation:forward strand
Alignment:------AGCAAGGGAGACG
CCGCATAGCAACGGA----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A C T G
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AGCAAGGGAGACG
AACAAAGG-----
 C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A C T G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----AGCAAGGGAGACG
ATAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A C T G
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGCAAGGGAGACG
-GGAAGTGAAAST
 C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A C T G
A C G T C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:AGCAAGGGAGACG---
------CCAGACRSVB
 C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGCAAGGGAGACG
-GAAACTGAAACT
 C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A C T G
A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T