Information for 13-CTTGAATAGC (Motif 35)

A G T C A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C G C A T C G T A C G A T A C G T A G T C C G T A G T C A C T A G
p-value:1e-7
log p-value:-1.687e+01
Information Content per bp:1.882
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif32.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets40.9 +/- 21.8bp
Average Position of motif in Background46.5 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTTGAATAGC
KCCAAAAATAGC
 A C G T A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A G T C
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTTGAATAGC--
NNNTATTGAATTGNNN
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A G T C A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CTTGAATAGC
NNTNTCATGAATGT-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A G T C
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTTGAATAGC
--GGATTAGC
 A G T C A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A G T C
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTTGAATAGC
CCAAAAATAG-
 A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A G T C
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T

EVX2/MA0888.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTTGAATAGC
GGTAATTAGC
 A G T C A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A G T C
T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTTGAATAGC
-TTGATTGN-
 A G T C A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A G T C
A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T

LIN54/MA0619.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTTGAATAGC
ATTTGAATT--
 A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A G T C
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

EVX1/MA0887.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTTGAATAGC
GGTAATTAGC
 A G T C A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A G T C
T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTTGAATAGC----
--TGATTGGCTANN
 A G T C A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T