Information for 16-MTGCAGMCASSCA (Motif 25)

G T C A A C G T A C T G A G T C C G T A A C T G T G C A G T A C C G T A T A C G A T C G A G T C C G T A
Reverse Opposite:
A C G T C T A G A T G C A T G C C G A T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T
p-value:1e-9
log p-value:-2.108e+01
Information Content per bp:1.858
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.5 +/- 22.2bp
Average Position of motif in Background43.2 +/- 15.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:MTGCAGMCASSCA----
--SCAGYCADGCATGAC
 G T C A A C G T A C T G A G T C C G T A A C T G T G C A G T A C C G T A T A C G A T C G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:MTGCAGMCASSCA
--CCAGACRSVB-
 G T C A A C G T A C T G A G T C C G T A A C T G T G C A G T A C C G T A T A C G A T C G A G T C C G T A
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:MTGCAGMCASSCA
--CCAGACAG---
 G T C A A C G T A C T G A G T C C G T A A C T G T G C A G T A C C G T A T A C G A T C G A G T C C G T A
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:MTGCAGMCASSCA
--BCAGACWA---
 G T C A A C G T A C T G A G T C C G T A A C T G T G C A G T A C C G T A T A C G A T C G A G T C C G T A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:MTGCAGMCASSCA-----
--GCAGCCAAGCGTGACN
 G T C A A C G T A C T G A G T C C G T A A C T G T G C A G T A C C G T A T A C G A T C G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--MTGCAGMCASSCA-
AGCGGCACACACGCAA
 A C G T A C G T G T C A A C G T A C T G A G T C C G T A A C T G T G C A G T A C C G T A T A C G A T C G A G T C C G T A A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-MTGCAGMCASSCA
GGTGYTGACAGS--
 A C G T G T C A A C G T A C T G A G T C C G T A A C T G T G C A G T A C C G T A T A C G A T C G A G T C C G T A
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:MTGCAGMCASSCA-
TGGCAGNCTGCCAG
 G T C A A C G T A C T G A G T C C G T A A C T G T G C A G T A C C G T A T A C G A T C G A G T C C G T A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---MTGCAGMCASSCA-
CAAATCCAGACATCACA
 A C G T A C G T A C G T G T C A A C G T A C T G A G T C C G T A A C T G T G C A G T A C C G T A T A C G A T C G A G T C C G T A A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:MTGCAGMCASSCA-
--SCTGTCAVTCAV
 G T C A A C G T A C T G A G T C C G T A A C T G T G C A G T A C C G T A T A C G A T C G A G T C C G T A A C G T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A