Information for 6-KWKCATGCAGAAC (Motif 13)

C A G T C G T A C A G T A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A G T C A C G T A T C G A G T C C G T A A C G T A C T G G T C A C G A T G T A C
p-value:1e-11
log p-value:-2.577e+01
Information Content per bp:1.890
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.6 +/- 22.9bp
Average Position of motif in Background88.5 +/- 0.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--KWKCATGCAGAAC--
TNNATTATGCATANNTT
 A C G T A C G T C A G T C G T A C A G T A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A C G T A A G T C A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:KWKCATGCAGAAC--
--ATATGCAAATNNN
 C A G T C G T A C A G T A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A C G T A A G T C A C G T A C G T
A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PB0090.1_Zbtb12_1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:KWKCATGCAGAAC-----
-NNGATCTAGAACCTNNN
 C A G T C G T A C A G T A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:KWKCATGCAGAAC
---CCTGCTGAGH
 C A G T C G T A C A G T A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A C G T A A G T C
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:KWKCATGCAGAAC
--TTATGCAAAT-
 C A G T C G T A C A G T A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A C G T A A G T C
A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:KWKCATGCAGAAC--
---TATGCWAATBAV
 C A G T C G T A C A G T A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A C G T A A G T C A C G T A C G T
A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---KWKCATGCAGAAC
CTTTGTTATGCAAAT-
 A C G T A C G T A C G T C A G T C G T A C A G T A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A C G T A A G T C
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:KWKCATGCAGAAC
TBGCACGCAA---
 C A G T C G T A C A G T A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A C G T A A G T C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---KWKCATGCAGAAC-
AAAATACATGTAATACT
 A C G T A C G T A C G T C A G T C G T A C A G T A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A C G T A A G T C A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

PH0085.1_Irx4/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---KWKCATGCAGAAC-
AATATACATGTAAAACA
 A C G T A C G T A C G T C A G T C G T A C A G T A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A C G T A A G T C A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A