Information for 5-AGGRAAMARGSCA (Motif 6)

C T G A C T A G C T A G T C A G G T C A C G T A T G C A G T C A C T A G A C T G A T G C G T A C T G C A
Reverse Opposite:
A C G T A C T G T A C G T G A C G A T C A C G T A C G T C G A T C A G T A G T C G A T C G A T C A G C T
p-value:1e-14
log p-value:-3.427e+01
Information Content per bp:1.653
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif6.51%
Number of Background Sequences with motif806.1
Percentage of Background Sequences with motif1.70%
Average Position of motif in Targets55.9 +/- 26.4bp
Average Position of motif in Background50.2 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AGGRAAMARGSCA
TAGGGCAAAGGTCA
 A C G T C T G A C T A G C T A G T C A G G T C A C G T A T G C A G T C A C T A G A C T G A T G C G T A C T G C A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AGGRAAMARGSCA
GTAGGGCAAAGGTCA
 A C G T A C G T C T G A C T A G C T A G T C A G G T C A C G T A T G C A G T C A C T A G A C T G A T G C G T A C T G C A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGGRAAMARGSCA
TGGGGCAAAGGTCA
 A C G T C T G A C T A G C T A G T C A G G T C A C G T A T G C A G T C A C T A G A C T G A T G C G T A C T G C A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGGRAAMARGSCA
GAGGTCAAAGGTCA
 A C G T C T G A C T A G C T A G T C A G G T C A C G T A T G C A G T C A C T A G A C T G A T G C G T A C T G C A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

HNF4G/MA0484.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGGRAAMARGSCA
AGAGTCCAAAGTCCA
 A C G T A C G T C T G A C T A G C T A G T C A G G T C A C G T A T G C A G T C A C T A G A C T G A T G C G T A C T G C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGGRAAMARGSCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C T G A C T A G C T A G T C A G G T C A C G T A T G C A G T C A C T A G A C T G A T G C G T A C T G C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Nr2f6/MA0677.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGGRAAMARGSCA
GAGGTCAAAGGTCA
 A C G T C T G A C T A G C T A G T C A G G T C A C G T A T G C A G T C A C T A G A C T G A T G C G T A C T G C A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGGRAAMARGSCA
-ANGNAAAGGTCA
 C T G A C T A G C T A G T C A G G T C A C G T A T G C A G T C A C T A G A C T G A T G C G T A C T G C A
A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

NR2C2/MA0504.1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGRAAMARGSCA
AGGGGTCAGAGGTCA
 A C G T A C G T C T G A C T A G C T A G T C A G G T C A C G T A T G C A G T C A C T A G A C T G A T G C G T A C T G C A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGRAAMARGSCA--
AAAGGTCAAAGGTCAAC
 A C G T A C G T C T G A C T A G C T A G T C A G G T C A C G T A T G C A G T C A C T A G A C T G A T G C G T A C T G C A A C G T A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C