Information for 4-AAGTCCAAAGTCY (Motif 5)

C G T A C T G A A T C G C A G T G A T C A G T C G C T A G T C A T C G A A C T G A C G T A G T C A G C T
Reverse Opposite:
C T G A T A C G C G T A T A G C A C G T A C G T C A G T A C T G C A T G G T C A A T G C A G C T A C G T
p-value:1e-16
log p-value:-3.751e+01
Information Content per bp:1.783
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.0 +/- 27.2bp
Average Position of motif in Background55.0 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AAGTCCAAAGTCY-
AGAGTCCAAAGTCCA
 A C G T C G T A C T G A A T C G C A G T G A T C A G T C G C T A G T C A T C G A A C T G A C G T A G T C A G C T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--AAGTCCAAAGTCY-
CANAGNNCAAAGTCCA
 A C G T A C G T C G T A C T G A A T C G C A G T G A T C A G T C G C T A G T C A T C G A A C T G A C G T A G T C A G C T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----AAGTCCAAAGTCY
GGCAAAAGTCCAATAA--
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A A T C G C A G T G A T C A G T C G C T A G T C A T C G A A C T G A C G T A G T C A G C T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAGTCCAAAGTCY---
GGGGTCAAAGTCCAAT
 C G T A C T G A A T C G C A G T G A T C A G T C G C T A G T C A T C G A A C T G A C G T A G T C A G C T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGTCCAAAGTCY--
AAGTTCAAGGTCAGC
 C G T A C T G A A T C G C A G T G A T C A G T C G C T A G T C A T C G A A C T G A C G T A G T C A G C T A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Tcf7/MA0769.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAGTCCAAAGTCY
AAAGATCAAAGG--
 A C G T C G T A C T G A A T C G C A G T G A T C A G T C G C T A G T C A T C G A A C T G A C G T A G T C A G C T
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAGTCCAAAGTCY
-AGGTCAAGGTCA
 C G T A C T G A A T C G C A G T G A T C A G T C G C T A G T C A T C G A A C T G A C G T A G T C A G C T
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

LEF1/MA0768.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AAGTCCAAAGTCY-
AAAGATCAAAGGGTT
 A C G T C G T A C T G A A T C G C A G T G A T C A G T C G C T A G T C A T C G A A C T G A C G T A G T C A G C T A C G T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AAGTCCAAAGTCY
-ACATCAAAGG--
 C G T A C T G A A T C G C A G T G A T C A G T C G C T A G T C A T C G A A C T G A C G T A G T C A G C T
A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AAGTCCAAAGTCY
CAAGGHCANV----
 A C G T C G T A C T G A A T C G C A G T G A T C A G T C G C T A G T C A T C G A A C T G A C G T A G T C A G C T
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T