Information for 12-TGGCAKGCGT (Motif 36)

A C G T A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G C G A T
Reverse Opposite:
C G T A A G T C A C T G A G T C G T A C A C G T A C T G A G T C A G T C C G T A
p-value:1e-7
log p-value:-1.617e+01
Information Content per bp:1.906
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif14.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets32.7 +/- 18.9bp
Average Position of motif in Background59.0 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGGCAKGCGT--
TGACAGGTGTCA
 A C G T A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G C G A T A C G T A C G T
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A

PB0147.1_Max_2/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGGCAKGCGT---
GTGCCACGCGACTG
 A C G T A C G T A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G C G A T A C G T A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

MEIS3/MA0775.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGGCAKGCGT
TTGACAGG---
 A C G T A C G T A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G C G A T
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TGGCAKGCGT--
NNATTGACAGGTGCTT
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G C G A T A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAKGCGT
VBTGWCAGCB--
 A C G T A C G T A C G T A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G C G A T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGGCAKGCGT
TTGACAGC---
 A C G T A C G T A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G C G A T
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGGCAKGCGT--
TGACAGGTGTCA
 A C G T A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G C G A T A C G T A C G T
G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAKGCGT
ARNTGACA-----
 A C G T A C G T A C G T A C G T A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G C G A T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGGCAKGCGT--
TGACAGCTGTCA
 A C G T A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G C G A T A C G T A C G T
G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGGCAKGCGT
TTGCCAAG---
 A C G T A C G T A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G C G A T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T