Information for 3-AAATAGCACTTAG (Motif 3)

C G T A C T G A C G T A A C G T C G T A A C T G T A G C C T G A A G T C A C G T C G A T C G T A A T C G
Reverse Opposite:
A T G C C G A T G C T A C G T A C T A G A G C T A C T G A G T C A C G T G T C A C G A T A G C T A C G T
p-value:1e-16
log p-value:-3.876e+01
Information Content per bp:1.799
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.2 +/- 21.7bp
Average Position of motif in Background86.0 +/- 1.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AAATAGCACTTAG
---AAGCACTTAA
 C G T A C T G A C G T A A C G T C G T A A C T G T A G C C T G A A G T C A C G T C G A T C G T A A T C G
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

ISL2/MA0914.1/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:forward strand
Alignment:AAATAGCACTTAG
-----GCACTTAA
 C G T A C T G A C G T A A C G T C G T A A C T G T A G C C T G A A G T C A C G T C G A T C G T A A T C G
A C G T A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AAATAGCACTTAG
DCYAAAAATAGM------
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A C G T A A C G T C G T A A C T G T A G C C T G A A G T C A C G T C G A T C G T A A T C G
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:4
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----AAATAGCACTTAG
KCCAAAAATAGC------
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A C G T A A C G T C G T A A C T G T A G C C T G A A G T C A C G T C G A T C G T A A T C G
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:5
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------AAATAGCACTTAG
ATGCTAAAAATAGAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A C G T A A C G T C G T A A C T G T A G C C T G A A G T C A C G T C G A T C G T A A T C G
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AAATAGCACTTAG--
NNNNTGAGCACTGTNNG
 A C G T A C G T C G T A C T G A C G T A A C G T C G T A A C T G T A G C C T G A A G T C A C G T C G A T C G T A A T C G A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AAATAGCACTTAG
CCAAAAATAG-------
 A C G T A C G T A C G T A C G T C G T A C T G A C G T A A C G T C G T A A C T G T A G C C T G A A G T C A C G T C G A T C G T A A T C G
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AAATAGCACTTAG
----ACCACTTAA
 C G T A C T G A C G T A A C G T C G T A A C T G T A G C C T G A A G T C A C G T C G A T C G T A A T C G
A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AAATAGCACTTAG
----ACCACTTAA
 C G T A C T G A C G T A A C G T C G T A A C T G T A G C C T G A A G T C A C G T C G A T C G T A A T C G
A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AAATAGCACTTAG
GCTAAAAATAGC------
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A C G T A A C G T C G T A A C T G T A G C C T G A A G T C A C G T C G A T C G T A A T C G
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T