Information for 9-AGCCCTDAGAAATGCA (Motif 14)

C T G A C T A G G T A C G T A C A G T C G A C T C G T A C G T A T A C G T C G A C G T A C G T A A C G T A C T G T G A C C T G A
Reverse Opposite:
A G C T A C T G G T A C G T C A A C G T C G A T A C G T A G T C A C G T G C A T C T G A C T A G C A T G A C T G G A T C G A C T
p-value:1e-11
log p-value:-2.653e+01
Information Content per bp:1.684
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif41.2
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets41.6 +/- 21.2bp
Average Position of motif in Background52.8 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:1
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AGCCCTDAGAAATGCA---
-------AGAAACGAAAGT
 C T G A C T A G G T A C G T A C A G T C G A C T C G T A C G T A T A C G T C G A C G T A C G T A A C G T A C T G T G A C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:2
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGCCCTDAGAAATGCA-
---CATTAATTATTCAT
 C T G A C T A G G T A C G T A C A G T C G A C T C G T A C G T A T A C G T C G A C G T A C G T A A C G T A C T G T G A C C T G A A C G T
A C G T A C G T A C G T G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AGCCCTDAGAAATGCA-------
------AAAATATGCATAATAAA
 C T G A C T A G G T A C G T A C A G T C G A C T C G T A C G T A T A C G T C G A C G T A C G T A A C G T A C T G T G A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.52
Offset:4
Orientation:forward strand
Alignment:AGCCCTDAGAAATGCA---
----GAAAAAATTGCAAGG
 C T G A C T A G G T A C G T A C A G T C G A C T C G T A C G T A T A C G T C G A C G T A C G T A A C G T A C T G T G A C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:AGCCCTDAGAAATGCA------
---------ATATGCAAATNNN
 C T G A C T A G G T A C G T A C A G T C G A C T C G T A C G T A T A C G T C G A C G T A C G T A A C G T A C T G T G A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:AGCCCTDAGAAATGCA-
-----TGAATTATGCAT
 C T G A C T A G G T A C G T A C A G T C G A C T C G T A C G T A T A C G T C G A C G T A C G T A A C G T A C T G T G A C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGCCCTDAGAAATGCA
-BCMATTAG-------
 C T G A C T A G G T A C G T A C A G T C G A C T C G T A C G T A T A C G T C G A C G T A C G T A A C G T A C T G T G A C C T G A
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGCCCTDAGAAATGCA-
-CTCATTAATTATGCAT
 C T G A C T A G G T A C G T A C A G T C G A C T C G T A C G T A T A C G T C G A C G T A C G T A A C G T A C T G T G A C C T G A A C G T
A C G T A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.50
Offset:9
Orientation:forward strand
Alignment:AGCCCTDAGAAATGCA---
---------ATATGCAAAT
 C T G A C T A G G T A C G T A C A G T C G A C T C G T A C G T A T A C G T C G A C G T A C G T A A C G T A C T G T G A C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AGCCCTDAGAAATGCA
AAGCACTTAA-------
 A C G T C T G A C T A G G T A C G T A C A G T C G A C T C G T A C G T A T A C G T C G A C G T A C G T A A C G T A C T G T G A C C T G A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T