Information for 7-TTGTCAAACA (Motif 13)

A G C T C G A T C T A G C G A T A T G C C G T A G T C A C G T A T G A C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C G T A C G T T A C G G C T A A G T C C G T A T C G A
p-value:1e-11
log p-value:-2.697e+01
Information Content per bp:1.814
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.82%
Number of Background Sequences with motif164.5
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets51.4 +/- 29.6bp
Average Position of motif in Background50.3 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TTGTCAAACA-
SCTGTCAVTCAV
 A C G T A G C T C G A T C T A G C G A T A T G C C G T A G T C A C G T A T G A C C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTGTCAAACA
NTGTCAN---
 A G C T C G A T C T A G C G A T A T G C C G T A G T C A C G T A T G A C C G T A
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTGTCAAACA
CCTGTCAA---
 A C G T A G C T C G A T C T A G C G A T A T G C C G T A G T C A C G T A T G A C C G T A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTGTCAAACA-
NCTGTCAATCAN
 A C G T A G C T C G A T C T A G C G A T A T G C C G T A G T C A C G T A T G A C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTGTCAAACA
YTGWCADY--
 A G C T C G A T C T A G C G A T A T G C C G T A G T C A C G T A T G A C C G T A
G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTGTCAAACA
GCTGTCAA---
 A C G T A G C T C G A T C T A G C G A T A T G C C G T A G T C A C G T A T G A C C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TTGTCAAACA
GSCTGTCACTCA
 A C G T A C G T A G C T C G A T C T A G C G A T A T G C C G T A G T C A C G T A T G A C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTGTCAAACA
CTTGGCAA---
 A C G T A G C T C G A T C T A G C G A T A T G C C G T A G T C A C G T A T G A C C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TTGTCAAACA--
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A C G T A G C T C G A T C T A G C G A T A T G C C G T A G T C A C G T A T G A C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

FOXD2/MA0847.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TTGTCAAACA
---GTAAACA
 A G C T C G A T C T A G C G A T A T G C C G T A G T C A C G T A T G A C C G T A
A C G T A C G T A C G T T C A G G A C T G T C A G T C A C G T A A G T C C T G A