Information for 4-TGTCCGCVDCCATGGC (Motif 19)

A G C T A C T G A G C T A G T C A G T C A C T G A G T C T A G C C A T G A G T C A G T C C G T A A G C T A T C G A C T G A G T C
Reverse Opposite:
A C T G G T A C A T G C C T G A G C A T A C T G A C T G G A T C A C T G A C T G G T A C A C T G C T A G C T G A A G T C C T G A
p-value:1e-8
log p-value:-1.960e+01
Information Content per bp:1.813
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.2 +/- 26.0bp
Average Position of motif in Background81.3 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TGTCCGCVDCCATGGC
CAACGTCCGCGG-------
 A C G T A C G T A C G T A G C T A C T G A G C T A G T C A G T C A C T G A G T C T A G C C A T G A G T C A G T C C G T A A G C T A T C G A C T G A G T C
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TGTCCGCVDCCATGGC--
----NGTTGCCATGGCAA
 A G C T A C T G A G C T A G T C A G T C A C T G A G T C T A G C C A T G A G T C A G T C C G T A A G C T A T C G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TGTCCGCVDCCATGGC---
---CGGTTGCCATGGCAAC
 A G C T A C T G A G C T A G T C A G T C A C T G A G T C T A G C C A T G A G T C A G T C C G T A A G C T A T C G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TGTCCGCVDCCATGGC---
-----GTTGCCATGGCAAC
 A G C T A C T G A G C T A G T C A G T C A C T G A G T C T A G C C A T G A G T C A G T C C G T A A G C T A T C G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGTCCGCVDCCATGGC
GGTCCCGCCCCCTTCTC
 A C G T A G C T A C T G A G C T A G T C A G T C A C T G A G T C T A G C C A T G A G T C A G T C C G T A A G C T A T C G A C T G A G T C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TGTCCGCVDCCATGGC----
-----GTTGCCATGGCAACM
 A G C T A C T G A G C T A G T C A G T C A C T G A G T C T A G C C A T G A G T C A G T C C G T A A G C T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX4/MA0799.1/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TGTCCGCVDCCATGGC----
----CGTTGCCATGGCAACN
 A G C T A C T G A G C T A G T C A G T C A C T G A G T C T A G C C A T G A G T C A G T C C G T A A G C T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TGTCCGCVDCCATGGC----
----CGTTGCCATGGCAACN
 A G C T A C T G A G C T A G T C A G T C A C T G A G T C T A G C C A T G A G T C A G T C C G T A A G C T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:TGTCCGCVDCCATGGC----
----CGTTGCCATGGCAACG
 A G C T A C T G A G C T A G T C A G T C A C T G A G T C T A G C C A T G A G T C A G T C C G T A A G C T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:TGTCCGCVDCCATGGC--
----GGTTGCCATGGCAA
 A G C T A C T G A G C T A G T C A G T C A C T G A G T C T A G C C A T G A G T C A G T C C G T A A G C T A T C G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A