Information for 7-CCTTTTGAAAVCA (Motif 11)

A G T C A G T C C G A T A C G T G C A T C G A T T A C G C G T A G T C A C G T A T A G C A G T C G C T A
Reverse Opposite:
C A G T C T A G A C T G A C G T C A G T A C G T A G T C C G T A C G T A C G T A C G T A A C T G A C T G
p-value:1e-10
log p-value:-2.459e+01
Information Content per bp:1.811
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif16.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.4 +/- 25.6bp
Average Position of motif in Background51.5 +/- 17.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CCTTTTGAAAVCA
---TTTGAAACCG
 A G T C A G T C C G A T A C G T G C A T C G A T T A C G C G T A G T C A C G T A T A G C A G T C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTTTTGAAAVCA
CCTTTTATAGNC-
 A G T C A G T C C G A T A C G T G C A T C G A T T A C G C G T A G T C A C G T A T A G C A G T C G C T A
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

HLTF/MA0109.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCTTTTGAAAVCA
AACCTTATAT-----
 A C G T A C G T A G T C A G T C C G A T A C G T G C A T C G A T T A C G C G T A G T C A C G T A T A G C A G T C G C T A
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCTTTTGAAAVCA
---ACTGAAACCA
 A G T C A G T C C G A T A C G T G C A T C G A T T A C G C G T A G T C A C G T A T A G C A G T C G C T A
A C G T A C G T A C G T G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCTTTTGAAAVCA
--ATTTGAATT--
 A G T C A G T C C G A T A C G T G C A T C G A T T A C G C G T A G T C A C G T A T A G C A G T C G C T A
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTTGAAAVCA
TTGACCTTTTGACCTT-
 A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T G C A T C G A T T A C G C G T A G T C A C G T A T A G C A G T C G C T A
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCTTTTGAAAVCA
CCYMATAAAA---
 A G T C A G T C C G A T A C G T G C A T C G A T T A C G C G T A G T C A C G T A T A G C A G T C G C T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

RARA/MA0729.1/Jaspar

Match Rank:8
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------CCTTTTGAAAVCA
CATTGACCTTTTGACCTC-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T G C A T C G A T T A C G C G T A G T C A C G T A T A G C A G T C G C T A
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCTTTTGAAAVCA
TGACCTTTTGACCTC-
 A C G T A C G T A C G T A G T C A G T C C G A T A C G T G C A T C G A T T A C G C G T A G T C A C G T A T A G C A G T C G C T A
A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCTTTTGAAAVCA
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T G C A T C G A T T A C G C G T A G T C A C G T A T A G C A G T C G C T A
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T