Information for 1-AGGCAGAGGGAGC (Motif 3)

C G T A A C T G A C T G G T A C C G T A C T A G C G T A A C T G C T A G T A C G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T
p-value:1e-14
log p-value:-3.272e+01
Information Content per bp:1.905
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.8 +/- 24.3bp
Average Position of motif in Background62.9 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:AGGCAGAGGGAGC
-------CGGAGC
 C G T A A C T G A C T G G T A C C G T A C T A G C G T A A C T G C T A G T A C G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGGCAGAGGGAGC----
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T C G T A A C T G A C T G G T A C C G T A C T A G C G T A A C T G C T A G T A C G C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGGCAGAGGGAGC
---AACAGGAAGT
 C G T A A C T G A C T G G T A C C G T A C T A G C G T A A C T G C T A G T A C G C G T A A C T G A G T C
A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGGCAGAGGGAGC-
----AGAGGAAGTG
 C G T A A C T G A C T G G T A C C G T A C T A G C G T A A C T G C T A G T A C G C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G

Zfx/MA0146.2/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGGCAGAGGGAGC
CAGGCCNNGGCCNN
 A C G T C G T A A C T G A C T G G T A C C G T A C T A G C G T A A C T G C T A G T A C G C G T A A C T G A G T C
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AGGCAGAGGGAGC-
--GCTGASTCAGCA
 C G T A A C T G A C T G G T A C C G T A C T A G C G T A A C T G C T A G T A C G C G T A A C T G A G T C A C G T
A C G T A C G T T C A G T A G C G A C T C A T G C T G A A T C G G C A T G T A C C G T A A C T G T A G C T G C A

SPIB/MA0081.1/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:AGGCAGAGGGAGC
----AGAGGAA--
 C G T A A C T G A C T G G T A C C G T A C T A G C G T A A C T G C T A G T A C G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.52
Offset:9
Orientation:forward strand
Alignment:AGGCAGAGGGAGC-
---------CAGCC
 C G T A A C T G A C T G G T A C C G T A C T A G C G T A A C T G C T A G T A C G C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGAGGGAGC
ACAGGATGTGGT---
 A C G T A C G T C G T A A C T G A C T G G T A C C G T A C T A G C G T A A C T G C T A G T A C G C G T A A C T G A G T C
T C G A T A G C G T C A A C T G C T A G C G T A C G A T A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGAGGGAGC
CCAGGAACAG-----
 A C G T A C G T C G T A A C T G A C T G G T A C C G T A C T A G C G T A A C T G C T A G T A C G C G T A A C T G A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T