Information for 18-AGTCTGGGCATTA (Motif 27)

C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C G T
p-value:1e-5
log p-value:-1.279e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.7 +/- 18.6bp
Average Position of motif in Background57.3 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGTCTGGGCATTA
WDNCTGGGCA---
 C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C C G T A A C G T A C G T C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGTCTGGGCATTA
--NGTGGGCAT--
 C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C C G T A A C G T A C G T C G T A
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGGGCATTA
CTGTCTGG------
 A C G T C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C C G T A A C G T A C G T C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGTCTGGGCATTA
VBSYGTCTGG------
 A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C C G T A A C G T A C G T C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGGGCATTA
TWGTCTGV------
 A C G T C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C C G T A A C G T A C G T C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AGTCTGGGCATTA
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C C G T A A C G T A C G T C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGTCTGGGCATTA--
NNNNTTGGGCACNNCN
 A C G T C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGTCTGGGCATTA
ACATGCCCGGGCAT--
 A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C C G T A A C G T A C G T C G T A
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:AGTCTGGGCATTA--
-----NNGGATTAGN
 C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGTCTGGGCATTA----
-CGTTGGGGATTAGCCT
 C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T