Information for 12-TTCCKYTAATAAA (Motif 21)

A C G T A C G T A G T C A G T C C A G T A G C T C A G T C T G A C G T A C G A T C G T A T C G A C G T A
Reverse Opposite:
A C G T A G C T A C G T C G T A C G A T A G C T G T C A T C A G G T C A C T A G A C T G G T C A C G T A
p-value:1e-7
log p-value:-1.786e+01
Information Content per bp:1.766
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif33.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets46.4 +/- 19.2bp
Average Position of motif in Background47.6 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.66
Offset:5
Orientation:forward strand
Alignment:TTCCKYTAATAAA--
-----CCAATAAAAA
 A C G T A C G T A G T C A G T C C A G T A G C T C A G T C T G A C G T A C G A T C G T A T C G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.66
Offset:4
Orientation:forward strand
Alignment:TTCCKYTAATAAA-
----NCYAATAAAA
 A C G T A C G T A G T C A G T C C A G T A G C T C A G T C T G A C G T A C G A T C G T A T C G A C G T A A C G T
A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.65
Offset:5
Orientation:forward strand
Alignment:TTCCKYTAATAAA--
-----CCAATAAAAA
 A C G T A C G T A G T C A G T C C A G T A G C T C A G T C T G A C G T A C G A T C G T A T C G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TTCCKYTAATAAA--
----GGTAATAAAAA
 A C G T A C G T A G T C A G T C C A G T A G C T C A G T C T G A C G T A C G A T C G T A T C G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.65
Offset:5
Orientation:forward strand
Alignment:TTCCKYTAATAAA-
-----GCAATAAAA
 A C G T A C G T A G T C A G T C C A G T A G C T C A G T C T G A C G T A C G A T C G T A T C G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TTCCKYTAATAAA-----
--CTACCAATAAAATTCT
 A C G T A C G T A G T C A G T C C A G T A G C T C A G T C T G A C G T A C G A T C G T A T C G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.64
Offset:5
Orientation:forward strand
Alignment:TTCCKYTAATAAA--
-----GTCATAAAAN
 A C G T A C G T A G T C A G T C C A G T A G C T C A G T C T G A C G T A C G A T C G T A T C G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.62
Offset:5
Orientation:forward strand
Alignment:TTCCKYTAATAAA--
-----CCAATAAAAC
 A C G T A C G T A G T C A G T C C A G T A G C T C A G T C T G A C G T A C G A T C G T A T C G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PB0162.1_Sfpi1_2/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTCCKYTAATAAA
GGTTCCNNAATTTG-
 A C G T A C G T A C G T A C G T A G T C A G T C C A G T A G C T C A G T C T G A C G T A C G A T C G T A T C G A C G T A
C A T G A C T G C G A T G C A T A G T C A G T C A C T G C A T G G C T A C G T A C G A T G A C T C A G T C A T G A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTCCKYTAATAAA------
--AATGCAATAAAATTTAT
 A C G T A C G T A G T C A G T C C A G T A G C T C A G T C T G A C G T A C G A T C G T A T C G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T