Information for 11-GARAGTGANTGCC (Motif 20)

A C T G G T C A T C A G C G T A C T A G A C G T A T C G C G T A G T A C A C G T A C T G A T G C A G T C
Reverse Opposite:
C T A G T A C G A G T C G T C A C A T G A C G T A T G C C G T A A G T C G C A T A G T C A C G T T A G C
p-value:1e-7
log p-value:-1.813e+01
Information Content per bp:1.724
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif62.3
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets49.4 +/- 31.1bp
Average Position of motif in Background49.8 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GARAGTGANTGCC--
---RGTTAGTGCCCY
 A C T G G T C A T C A G C G T A C T A G A C G T A T C G C G T A G T A C A C G T A C T G A T G C A G T C A C G T A C G T
A C G T A C G T A C G T C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GARAGTGANTGCC---
----BTGABTGACAGS
 A C T G G T C A T C A G C G T A C T A G A C G T A T C G C G T A G T A C A C G T A C T G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GARAGTGANTGCC---
----NTGATTGACAGN
 A C T G G T C A T C A G C G T A C T A G A C G T A T C G C G T A G T A C A C G T A C T G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PB0195.1_Zbtb3_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GARAGTGANTGCC
NNNNTGCCAGTGATTG--
 A C G T A C G T A C G T A C G T A C G T A C T G G T C A T C A G C G T A C T A G A C G T A T C G C G T A G T A C A C G T A C T G A T G C A G T C
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GARAGTGANTGCC
----TTGATTGN-
 A C T G G T C A T C A G C G T A C T A G A C G T A T C G C G T A G T A C A C G T A C T G A T G C A G T C
A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GARAGTGANTGCC---
--AGGTCANTGACCTN
 A C T G G T C A T C A G C G T A C T A G A C G T A T C G C G T A G T A C A C G T A C T G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GARAGTGANTGCC----
-----TGATTGGCTANN
 A C T G G T C A T C A G C G T A C T A G A C G T A T C G C G T A G T A C A C G T A C T G A T G C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GARAGTGANTGCC-
----TTAAGTGCTT
 A C T G G T C A T C A G C G T A C T A G A C G T A T C G C G T A G T A C A C G T A C T G A T G C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GARAGTGANTGCC
AGGGAAGTCATTTCT
 A C G T A C G T A C T G G T C A T C A G C G T A C T A G A C G T A T C G C G T A G T A C A C G T A C T G A T G C A G T C
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GARAGTGANTGCC
GAAAGTGAAAGT-
 A C T G G T C A T C A G C G T A C T A G A C G T A T C G C G T A G T A C A C G T A C T G A T G C A G T C
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T