Information for 2-GGAAGCCCAGTGTGCA (Motif 2)

A T C G C A T G G T C A C T G A C A T G A T G C G A T C G T A C C G T A A C T G C G A T A C T G A C G T A T C G G A T C C G T A
Reverse Opposite:
C G A T C T A G T A G C C G T A G T A C C G T A G T A C G C A T C A T G C A T G A T C G G A T C A G C T A C G T G A T C A T G C
p-value:1e-14
log p-value:-3.419e+01
Information Content per bp:1.706
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.9 +/- 23.7bp
Average Position of motif in Background25.5 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGAAGCCCAGTGTGCA--
-TGTTCCCATTGTGTACT
 A T C G C A T G G T C A C T G A C A T G A T G C G A T C G T A C C G T A A C T G C G A T A C T G A C G T A T C G G A T C C G T A A C G T A C G T
A C G T C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

PB0044.1_Mtf1_1/Jaspar

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GGAAGCCCAGTGTGCA----
----GGGCCGTGTGCAAAAA
 A T C G C A T G G T C A C T G A C A T G A T G C G A T C G T A C C G T A A C T G C G A T A C T G A C G T A T C G G A T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GGAAGCCCAGTGTGCA
-----NCCATTGTTC-
 A T C G C A T G G T C A C T G A C A T G A T G C G A T C G T A C C G T A A C T G C G A T A C T G A C G T A T C G G A T C C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGAAGCCCAGTGTGCA
--AAGGCAAGTGT---
 A T C G C A T G G T C A C T G A C A T G A T G C G A T C G T A C C G T A A C T G C G A T A C T G A C G T A T C G G A T C C G T A
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GGAAGCCCAGTGTGCA--
---NNNCCATTGTGTNAN
 A T C G C A T G G T C A C T G A C A T G A T G C G A T C G T A C C G T A A C T G C G A T A C T G A C G T A T C G G A T C C G T A A C G T A C G T
A C G T A C G T A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GGAAGCCCAGTGTGCA
------CCTTTGTT--
 A T C G C A T G G T C A C T G A C A T G A T G C G A T C G T A C C G T A A C T G C G A T A C T G A C G T A T C G G A T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GGAAGCCCAGTGTGCA
---TGCCCAGNHW---
 A T C G C A T G G T C A C T G A C A T G A T G C G A T C G T A C C G T A A C T G C G A T A C T G A C G T A T C G G A T C C G T A
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GGAAGCCCAGTGTGCA---
---NNGCGTGTGTGCNGCN
 A T C G C A T G G T C A C T G A C A T G A T G C G A T C G T A C C G T A A C T G C G A T A C T G A C G T A T C G G A T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGAAGCCCAGTGTGCA
NGAAGC----------
 A T C G C A T G G T C A C T G A C A T G A T G C G A T C G T A C C G T A A C T G C G A T A C T G A C G T A T C G G A T C C G T A
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GGAAGCCCAGTGTGCA
-------CTTTGT---
 A T C G C A T G G T C A C T G A C A T G A T G C G A T C G T A C C G T A A C T G C G A T A C T G A C G T A T C G G A T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T