Information for 3-AATGACAGCA (Motif 3)

G T C A C T G A C A G T C T A G C G T A A G T C C G T A C T A G T A G C G C T A
Reverse Opposite:
C G A T A T C G G A T C A C G T A C T G C G A T A G T C G T C A A G C T A C G T
p-value:1e-47
log p-value:-1.088e+02
Information Content per bp:1.776
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif6.61%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets49.6 +/- 28.6bp
Average Position of motif in Background69.2 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS3/MA0775.1/Jaspar

Match Rank:1
Score:0.82
Offset:1
Orientation:forward strand
Alignment:AATGACAGCA
-TTGACAGG-
 G T C A C T G A C A G T C T A G C G T A A G T C C G T A C T A G T A G C G C T A
A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.81
Offset:1
Orientation:forward strand
Alignment:AATGACAGCA
-TTGACAGC-
 G T C A C T G A C A G T C T A G C G T A A G T C C G T A C T A G T A G C G C T A
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---AATGACAGCA----
GATATTGACAGCTGCGT
 A C G T A C G T A C G T G T C A C T G A C A G T C T A G C G T A A G T C C G T A C T A G T A G C G C T A A C G T A C G T A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.79
Offset:1
Orientation:forward strand
Alignment:AATGACAGCA
-TTGACAG--
 G T C A C T G A C A G T C T A G C G T A A G T C C G T A C T A G T A G C G C T A
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AATGACAGCA----
NNATTGACAGGTGCTT
 A C G T A C G T G T C A C T G A C A G T C T A G C G T A A G T C C G T A C T A G T A G C G C T A A C G T A C G T A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AATGACAGCA
VBTGWCAGCB
 G T C A C T G A C A G T C T A G C G T A A G T C C G T A C T A G T A G C G C T A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---AATGACAGCA
NTGATTGACAGN-
 A C G T A C G T A C G T G T C A C T G A C A G T C T A G C G T A A G T C C G T A C T A G T A G C G C T A
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T

PH0105.1_Meis3/Jaspar

Match Rank:8
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AATGACAGCA----
GTATTGACAGGTNNTT
 A C G T A C G T G T C A C T G A C A G T C T A G C G T A A G T C C G T A C T A G T A G C G C T A A C G T A C G T A C G T A C G T
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AATGACAGCA
RHTGWCAR--
 G T C A C T G A C A G T C T A G C G T A A G T C C G T A C T A G T A G C G C T A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AATGACAGCA
TGAGTGACAGSC
 A C G T A C G T G T C A C T G A C A G T C T A G C G T A A G T C C G T A C T A G T A G C G C T A
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C