Information for 20-RTACAYRGCARRTACA (Motif 42)

C T A G A G C T C G T A A G T C C G T A A G T C C T G A A C T G A G T C C G T A T C G A C T G A A G C T C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C T G A A G C T A G C T A C G T C T A G A G T C A G C T C T A G A C G T A C T G A C G T C T G A A G T C
p-value:1e-4
log p-value:-9.415e+00
Information Content per bp:1.853
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.8 +/- 17.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.52
Offset:7
Orientation:forward strand
Alignment:RTACAYRGCARRTACA-
-------CCAGGAACAG
 C T A G A G C T C G T A A G T C C G T A A G T C C T G A A C T G A G T C C G T A T C G A C T G A A G C T C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.51
Offset:0
Orientation:forward strand
Alignment:RTACAYRGCARRTACA
GAGCACAGCAGGACA-
 C T A G A G C T C G T A A G T C C G T A A G T C C T G A A C T G A G T C C G T A T C G A C T G A A G C T C G T A A G T C C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:RTACAYRGCARRTACA
--ACAAAG--------
 C T A G A G C T C G T A A G T C C G T A A G T C C T G A A C T G A G T C C G T A T C G A C T G A A G C T C G T A A G T C C G T A
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.50
Offset:3
Orientation:forward strand
Alignment:RTACAYRGCARRTACA
---CACAGCAGGGGG-
 C T A G A G C T C G T A A G T C C G T A A G T C C T G A A C T G A G T C C G T A T C G A C T G A A G C T C G T A A G T C C G T A
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.50
Offset:0
Orientation:forward strand
Alignment:RTACAYRGCARRTACA
CCACACAGCAGGAGA-
 C T A G A G C T C G T A A G T C C G T A A G T C C T G A A C T G A G T C C G T A T C G A C T G A A G C T C G T A A G T C C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.49
Offset:4
Orientation:forward strand
Alignment:RTACAYRGCARRTACA
----AAGGCAAGTGT-
 C T A G A G C T C G T A A G T C C G T A A G T C C T G A A C T G A G T C C G T A T C G A C T G A A G C T C G T A A G T C C G T A
A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:RTACAYRGCARRTACA
----WAAGTAAAYA--
 C T A G A G C T C G T A A G T C C G T A A G T C C T G A A C T G A G T C C G T A T C G A C T G A A G C T C G T A A G T C C G T A
A C G T A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.48
Offset:3
Orientation:forward strand
Alignment:RTACAYRGCARRTACA
---AACAGGAAGT---
 C T A G A G C T C G T A A G T C C G T A A G T C C T G A A C T G A G T C C G T A T C G A C T G A A G C T C G T A A G T C C G T A
A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.48
Offset:0
Orientation:forward strand
Alignment:RTACAYRGCARRTACA
CCACACAGCAGGAGA-
 C T A G A G C T C G T A A G T C C G T A A G T C C T G A A C T G A G T C C G T A T C G A C T G A A G C T C G T A A G T C C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.47
Offset:2
Orientation:reverse strand
Alignment:RTACAYRGCARRTACA
--DCTCAGCAGG----
 C T A G A G C T C G T A A G T C C G T A A G T C C T G A A C T G A G T C C G T A T C G A C T G A A G C T C G T A A G T C C G T A
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T