Information for 12-TTTGGCATCC (Motif 39)

A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C G T A C T G A G T C A G T C C G T A C G T A C G T A
p-value:1e-5
log p-value:-1.238e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.0 +/- 25.0bp
Average Position of motif in Background39.6 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-TTTGGCATCC
NNTTGGCANN-
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TTTGGCATCC
NTTGGCANN-
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TTTGGCATCC
-TTGGCA---
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A G T C
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTTGGCATCC
GGTTGGCAT--
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGGCATCC-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A G T C A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTTGGCATCC
CTTGGCAA--
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTGGCATCC
NGTGGGCAT--
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A G T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTTGGCATCC--
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A G T C A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTTGGCATCC
GGTCTGGCAT--
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTTGGCATCC-
WCATTTTGKCCTCYT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A G T C A C G T
C G T A G A T C C T G A A C G T A C G T A C G T C A G T C T A G A C G T G T A C G T A C G A C T A G T C G A T C A C G T