Information for 7-AGGCAAGGCA (Motif 32)

C T G A C T A G T C A G A T G C G T C A C G T A A C T G C A T G A T G C C G T A
Reverse Opposite:
C G A T A T C G G A T C G T A C G C A T A C G T A T C G A G T C A G T C A G C T
p-value:1e-7
log p-value:-1.774e+01
Information Content per bp:1.832
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif3.68%
Number of Background Sequences with motif297.5
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets49.4 +/- 21.3bp
Average Position of motif in Background51.4 +/- 40.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGGCAAGGCA
AAGGCAAGTGT
 A C G T C T G A C T A G T C A G A T G C G T C A C G T A A C T G C A T G A T G C C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGGCAAGGCA-----
AGGGAAGTCATTTCT
 C T G A C T A G T C A G A T G C G T C A C G T A A C T G C A T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGGCAAGGCA---
---CAAGGHCANV
 C T G A C T A G T C A G A T G C G T C A C G T A A C T G C A T G A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGGCAAGGCA--
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T C T G A C T A G T C A G A T G C G T C A C G T A A C T G C A T G A T G C C G T A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGGCAAGGCA
BCAGACWA----
 A C G T A C G T C T G A C T A G T C A G A T G C G T C A C G T A A C T G C A T G A T G C C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGGCAAGGCA
AAAAGTCAA----
 A C G T A C G T A C G T C T G A C T A G T C A G A T G C G T C A C G T A A C T G C A T G A T G C C G T A
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGGCAAGGCA--
CAAAGGCGTGGCCAG
 A C G T A C G T A C G T C T G A C T A G T C A G A T G C G T C A C G T A A C T G C A T G A T G C C G T A A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

Mecom/MA0029.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGGCAAGGCA---
AAGATAAGATAACA
 A C G T C T G A C T A G T C A G A T G C G T C A C G T A A C T G C A T G A T G C C G T A A C G T A C G T A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGGCAAGGCA
AAAACAATGG-
 A C G T C T G A C T A G T C A G A T G C G T C A C G T A A C T G C A T G A T G C C G T A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGGCAAGGCA-
-NTCAAGGTCA
 C T G A C T A G T C A G A T G C G T C A C G T A A C T G C A T G A T G C C G T A A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A