Information for 11-CGTGCGATCCCGT (Motif 20)

A G T C C T A G A C G T C T A G A G T C C T A G G T C A A C G T A G T C A G T C A G T C C T A G A G C T
Reverse Opposite:
C T G A A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C T G A G T C C G T A A G T C A C T G
p-value:1e-8
log p-value:-2.062e+01
Information Content per bp:1.861
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 29.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGTGCGATCCCGT
AGATGCAATCCC--
 A C G T A G T C C T A G A C G T C T A G A G T C C T A G G T C A A C G T A G T C A G T C A G T C C T A G A G C T
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C A C G T A C G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGTGCGATCCCGT----
NNNTCCATCCCATAANN
 A G T C C T A G A C G T C T A G A G T C C T A G G T C A A C G T A G T C A G T C A G T C C T A G A G C T A C G T A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGATCCCGT-
ACTATGCCAACCTACC
 A C G T A C G T A G T C C T A G A C G T C T A G A G T C C T A G G T C A A C G T A G T C A G T C A G T C C T A G A G C T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGATCCCGT
RTACGTGC--------
 A C G T A C G T A C G T A G T C C T A G A C G T C T A G A G T C C T A G G T C A A C G T A G T C A G T C A G T C C T A G A G C T
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGATCCCGT
TACGTGCV-------
 A C G T A C G T A G T C C T A G A C G T C T A G A G T C C T A G G T C A A C G T A G T C A G T C A G T C C T A G A G C T
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CGTGCGATCCCGT--
-----GGTCCCGCCC
 A G T C C T A G A C G T C T A G A G T C C T A G G T C A A C G T A G T C A G T C A G T C C T A G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGATCCCGT
GGACGTGC--------
 A C G T A C G T A C G T A G T C C T A G A C G T C T A G A G T C C T A G G T C A A C G T A G T C A G T C A G T C C T A G A G C T
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CGTGCGATCCCGT-
----NYTTCCCGCC
 A G T C C T A G A C G T C T A G A G T C C T A G G T C A A C G T A G T C A G T C A G T C C T A G A G C T A C G T
A C G T A C G T A C G T A C G T T A G C A G C T G A C T A G C T A T G C T G A C T A G C C A T G A T G C A T G C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCGATCCCGT
TTGCGTGCVA------
 A C G T A C G T A C G T A G T C C T A G A C G T C T A G A G T C C T A G G T C A A C G T A G T C A G T C A G T C C T A G A G C T
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CGTGCGATCCCGT
-----GCTCCG--
 A G T C C T A G A C G T C T A G A G T C C T A G G T C A A C G T A G T C A G T C A G T C C T A G A G C T
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T