Information for 7-CCAATTAAAG (Motif 37)

A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.323e+01
Information Content per bp:1.960
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets74.8 +/- 19.2bp
Average Position of motif in Background45.1 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-CCAATTAAAG
NGCAATTAAA-
 A C G T A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A A C T G
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---CCAATTAAAG---
AACCCAATAAAATTCG
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCAATTAAAG
CCAATAAAAC
 A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A A C T G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CCAATTAAAG
NCYAATAAAA-
 A C G T A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A A C T G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

MSX2/MA0708.1/Jaspar

Match Rank:5
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CCAATTAAAG
CCAATTAA--
 A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A A C T G
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CCAATTAAAG
CCAATAAAAA
 A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A A C T G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CCAATTAAAG
CCAATAAAAA
 A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A A C T G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CCAATTAAAG---
CTACCAATAAAATTCT
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

MSX1/MA0666.1/Jaspar

Match Rank:9
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CCAATTAAAG
CCAATTAG--
 A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A A C T G
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:10
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CCAATTAAAG
CCAATTAA--
 A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A A C T G
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T