Information for 6-TKCCACTAGA (Motif 36)

C A G T C A T G T A G C T A G C G C T A A T G C G C A T G C T A A C T G T C G A
Reverse Opposite:
A G C T G T A C C G A T C G T A T A C G C G A T A T C G A T C G G T A C G T C A
p-value:1e-6
log p-value:-1.598e+01
Information Content per bp:1.604
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif164.7
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets41.1 +/- 18.7bp
Average Position of motif in Background47.7 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TKCCACTAGA-
-ACCACTTGAA
 C A G T C A T G T A G C T A G C G C T A A T G C G C A T G C T A A C T G T C G A A C G T
A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TKCCACTAGA-
--CCACTTGAA
 C A G T C A T G T A G C T A G C G C T A A T G C G C A T G C T A A C T G T C G A A C G T
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TKCCACTAGA-
-NSCACTYVAV
 C A G T C A T G T A G C T A G C G C T A A T G C G C A T G C T A A C T G T C G A A C G T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TKCCACTAGA----
TAAGCCACTTGAAATT
 A C G T A C G T C A G T C A T G T A G C T A G C G C T A A T G C G C A T G C T A A C T G T C G A A C G T A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TKCCACTAGA-----
ATAACCACTTGAAAATT
 A C G T A C G T C A G T C A T G T A G C T A G C G C T A A T G C G C A T G C T A A C T G T C G A A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PH0114.1_Nkx2-5/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TKCCACTAGA----
TAAGCCACTTGAATTT
 A C G T A C G T C A G T C A T G T A G C T A G C G C T A A T G C G C A T G C T A A C T G T C G A A C G T A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TKCCACTAGA----
TAAGCCACTTGAAATT
 A C G T A C G T C A G T C A T G T A G C T A G C G C T A A T G C G C A T G C T A A C T G T C G A A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TKCCACTAGA
MRSCACTYAA
 C A G T C A T G T A G C T A G C G C T A A T G C G C A T G C T A A C T G T C G A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TKCCACTAGA
ATTTTCCATT---
 A C G T A C G T A C G T C A G T C A T G T A G C T A G C G C T A A T G C G C A T G C T A A C T G T C G A
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TKCCACTAGA---------
TGGCCACCAGGTGGCACTNT
 A C G T C A G T C A T G T A G C T A G C G C T A A T G C G C A T G C T A A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T