Information for 4-CATAGCTTGC (Motif 33)

A G T C G T C A A G C T C G T A A C T G A G T C C G A T A C G T A T C G A G T C
Reverse Opposite:
A C T G A T G C C G T A C G T A A C T G A G T C C G A T C T G A A C G T A C T G
p-value:1e-7
log p-value:-1.782e+01
Information Content per bp:1.838
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif97.1
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets53.8 +/- 25.6bp
Average Position of motif in Background48.5 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CATAGCTTGC--
GAGCACAGCAGGACA
 A C G T A C G T A C G T A G T C G T C A A G C T C G T A A C T G A G T C C G A T A C G T A T C G A G T C A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CATAGCTTGC
--AAGCTTG-
 A G T C G T C A A G C T C G T A A C T G A G T C C G A T A C G T A T C G A G T C
A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CATAGCTTGC--
--TTGCGTGCVA
 A G T C G T C A A G C T C G T A A C T G A G T C C G A T A C G T A T C G A G T C A C G T A C G T
A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CATAGCTTGC--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C G T C A A G C T C G T A A C T G A G T C C G A T A C G T A T C G A G T C A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CATAGCTTGC--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C G T C A A G C T C G T A A C T G A G T C C G A T A C G T A T C G A G T C A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CATAGCTTGC----
CCATTGTATGCAAAT
 A C G T A G T C G T C A A G C T C G T A A C T G A G T C C G A T A C G T A T C G A G T C A C G T A C G T A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CATAGCTTGC--
TACCATAGCAACGGT
 A C G T A C G T A C G T A G T C G T C A A G C T C G T A A C T G A G T C C G A T A C G T A T C G A G T C A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CATAGCTTGC
----GCTTCC
 A G T C G T C A A G C T C G T A A C T G A G T C C G A T A C G T A T C G A G T C
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CATAGCTTGC
DCTCAGCAGG-
 A C G T A G T C G T C A A G C T C G T A A C T G A G T C C G A T A C G T A T C G A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CATAGCTTGC--
CCGCATAGCAACGGA
 A C G T A C G T A C G T A G T C G T C A A G C T C G T A A C T G A G T C C G A T A C G T A T C G A G T C A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A